Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC17.63■□□□□ 0.41
SDCBPO00560 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC17.63■□□□□ 0.41
SDCBPO00560 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SDCBPO00560 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
SDCBPO00560 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC17.62■□□□□ 0.41
SDCBPO00560 PLK5-205ENST00000642079 1969 ntBASIC17.62■□□□□ 0.41
SDCBPO00560 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SDCBPO00560 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SDCBPO00560 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC17.62■□□□□ 0.41
SDCBPO00560 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SDCBPO00560 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SDCBPO00560 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
SDCBPO00560 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC17.62■□□□□ 0.41
SDCBPO00560 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
SDCBPO00560 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SDCBPO00560 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SDCBPO00560 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SDCBPO00560 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC17.62■□□□□ 0.41
SDCBPO00560 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC17.62■□□□□ 0.41
SDCBPO00560 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC17.62■□□□□ 0.41
SDCBPO00560 AL355001.2-201ENST00000620617 1191 ntBASIC17.62■□□□□ 0.41
SDCBPO00560 MPST-208ENST00000628507 698 ntTSL 5 BASIC17.62■□□□□ 0.41
SDCBPO00560 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
SDCBPO00560 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
SDCBPO00560 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
SDCBPO00560 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
SDCBPO00560 GABARAPL3-202ENST00000624044 1851 ntBASIC17.62■□□□□ 0.41
SDCBPO00560 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
SDCBPO00560 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC17.62■□□□□ 0.41
SDCBPO00560 AP005212.1-201ENST00000581547 1997 ntBASIC17.62■□□□□ 0.41
SDCBPO00560 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC17.62■□□□□ 0.41
SDCBPO00560 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SDCBPO00560 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SDCBPO00560 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SDCBPO00560 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SDCBPO00560 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
SDCBPO00560 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC17.62■□□□□ 0.41
SDCBPO00560 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC17.61■□□□□ 0.41
SDCBPO00560 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
SDCBPO00560 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SDCBPO00560 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
SDCBPO00560 AP001330.3-201ENST00000520123 633 ntBASIC17.61■□□□□ 0.41
SDCBPO00560 AC133561.4-201ENST00000566112 224 ntBASIC17.61■□□□□ 0.41
SDCBPO00560 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC17.61■□□□□ 0.41
SDCBPO00560 RALB-208ENST00000631312 311 ntTSL 5 BASIC17.61■□□□□ 0.41
SDCBPO00560 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SDCBPO00560 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SDCBPO00560 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC17.61■□□□□ 0.41
SDCBPO00560 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
SDCBPO00560 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
SDCBPO00560 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SDCBPO00560 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
SDCBPO00560 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SDCBPO00560 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SDCBPO00560 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SDCBPO00560 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SDCBPO00560 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
SDCBPO00560 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SDCBPO00560 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SDCBPO00560 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SDCBPO00560 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SDCBPO00560 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SDCBPO00560 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SDCBPO00560 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
SDCBPO00560 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC17.6■□□□□ 0.41
SDCBPO00560 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
SDCBPO00560 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC17.6■□□□□ 0.41
SDCBPO00560 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC17.6■□□□□ 0.41
SDCBPO00560 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SDCBPO00560 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SDCBPO00560 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SDCBPO00560 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SDCBPO00560 SMUG1P1-201ENST00000590640 811 ntBASIC17.6■□□□□ 0.41
SDCBPO00560 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SDCBPO00560 TSPY26P-201ENST00000476365 1326 ntBASIC17.6■□□□□ 0.41
SDCBPO00560 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SDCBPO00560 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SDCBPO00560 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
SDCBPO00560 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SDCBPO00560 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
SDCBPO00560 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC17.6■□□□□ 0.41
SDCBPO00560 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
SDCBPO00560 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC17.59■□□□□ 0.41
SDCBPO00560 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SDCBPO00560 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
SDCBPO00560 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
SDCBPO00560 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SDCBPO00560 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
SDCBPO00560 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SDCBPO00560 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
SDCBPO00560 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SDCBPO00560 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SDCBPO00560 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
SDCBPO00560 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC17.59■□□□□ 0.41
SDCBPO00560 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC17.59■□□□□ 0.41
SDCBPO00560 AF213884.3-201ENST00000563833 479 ntBASIC17.59■□□□□ 0.41
SDCBPO00560 MAG-206ENST00000597035 542 ntTSL 4 BASIC17.59■□□□□ 0.41
SDCBPO00560 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC17.59■□□□□ 0.41
SDCBPO00560 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC17.59■□□□□ 0.41
SDCBPO00560 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms