Protein–RNA interactions for Protein: E9PGA6

C1QTNF3-AMACR, C1QTNF3-AMACR readthrough (NMD candidate), humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C1QTNF3-AMACRE9PGA6 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC20.88■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 LSM12P1-201ENST00000411836 588 ntBASIC20.87■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.87■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.86■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC20.86■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC20.86■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 AC097658.1-201ENST00000475555 843 ntBASIC20.86■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC20.86■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC20.86■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC20.86■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.86■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC20.85■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC20.85■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC20.85■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC20.85■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC20.85■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC20.84■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC20.84■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.84■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 ABHD17AP1-201ENST00000358206 933 ntBASIC20.84■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC20.84■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 RHEB-204ENST00000472642 900 ntTSL 3 BASIC20.84■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 AC091874.3-201ENST00000512672 1195 ntBASIC20.84■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC20.84■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC20.84■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 CYP2T3P-201ENST00000601990 817 ntBASIC20.84■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC20.84■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.84■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC20.83■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 AC116050.2-201ENST00000612102 1779 ntBASIC20.83■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 MCRIP2P1-201ENST00000394346 511 ntBASIC20.83■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 DUSP5P2-201ENST00000426873 1033 ntBASIC20.83■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 VMO1-204ENST00000441199 741 ntTSL 2 BASIC20.83■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC20.83■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC20.83■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.83■□□□□ 0.92
C1QTNF3-AMACRE9PGA6 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
C1QTNF3-AMACRE9PGA6 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
C1QTNF3-AMACRE9PGA6 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.83■□□□□ 0.92
C1QTNF3-AMACRE9PGA6 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
C1QTNF3-AMACRE9PGA6 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
C1QTNF3-AMACRE9PGA6 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
C1QTNF3-AMACRE9PGA6 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
C1QTNF3-AMACRE9PGA6 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
C1QTNF3-AMACRE9PGA6 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
C1QTNF3-AMACRE9PGA6 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
C1QTNF3-AMACRE9PGA6 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC20.82■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms