Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PCDHGA3Q9Y5H0 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
PCDHGA3Q9Y5H0 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC20.19■□□□□ 0.82
PCDHGA3Q9Y5H0 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC20.19■□□□□ 0.82
PCDHGA3Q9Y5H0 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PCDHGA3Q9Y5H0 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDHGA3Q9Y5H0 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDHGA3Q9Y5H0 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC20.18■□□□□ 0.82
PCDHGA3Q9Y5H0 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDHGA3Q9Y5H0 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PCDHGA3Q9Y5H0 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDHGA3Q9Y5H0 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PCDHGA3Q9Y5H0 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDHGA3Q9Y5H0 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC20.18■□□□□ 0.82
PCDHGA3Q9Y5H0 BMP1-204ENST00000397814 836 ntTSL 4 BASIC20.18■□□□□ 0.82
PCDHGA3Q9Y5H0 CYP2T1P-201ENST00000432607 1285 ntBASIC20.18■□□□□ 0.82
PCDHGA3Q9Y5H0 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC20.18■□□□□ 0.82
PCDHGA3Q9Y5H0 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC20.18■□□□□ 0.82
PCDHGA3Q9Y5H0 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDHGA3Q9Y5H0 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDHGA3Q9Y5H0 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDHGA3Q9Y5H0 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDHGA3Q9Y5H0 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC20.18■□□□□ 0.82
PCDHGA3Q9Y5H0 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDHGA3Q9Y5H0 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
PCDHGA3Q9Y5H0 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC20.18■□□□□ 0.82
PCDHGA3Q9Y5H0 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDHGA3Q9Y5H0 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
PCDHGA3Q9Y5H0 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
PCDHGA3Q9Y5H0 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PCDHGA3Q9Y5H0 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PCDHGA3Q9Y5H0 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCDHGA3Q9Y5H0 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
PCDHGA3Q9Y5H0 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC20.17■□□□□ 0.82
PCDHGA3Q9Y5H0 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC20.17■□□□□ 0.82
PCDHGA3Q9Y5H0 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PCDHGA3Q9Y5H0 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCDHGA3Q9Y5H0 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC20.17■□□□□ 0.82
PCDHGA3Q9Y5H0 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC20.17■□□□□ 0.82
PCDHGA3Q9Y5H0 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC20.17■□□□□ 0.82
PCDHGA3Q9Y5H0 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCDHGA3Q9Y5H0 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC20.17■□□□□ 0.82
PCDHGA3Q9Y5H0 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCDHGA3Q9Y5H0 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.17■□□□□ 0.82
PCDHGA3Q9Y5H0 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCDHGA3Q9Y5H0 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCDHGA3Q9Y5H0 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC20.17■□□□□ 0.82
PCDHGA3Q9Y5H0 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PCDHGA3Q9Y5H0 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC20.16■□□□□ 0.82
PCDHGA3Q9Y5H0 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
PCDHGA3Q9Y5H0 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
PCDHGA3Q9Y5H0 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PCDHGA3Q9Y5H0 AL512625.2-201ENST00000417533 625 ntBASIC20.16■□□□□ 0.82
PCDHGA3Q9Y5H0 FAM201B-201ENST00000458407 597 ntBASIC20.16■□□□□ 0.82
PCDHGA3Q9Y5H0 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
PCDHGA3Q9Y5H0 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC20.16■□□□□ 0.82
PCDHGA3Q9Y5H0 MIR4651-201ENST00000582622 73 ntBASIC20.16■□□□□ 0.82
PCDHGA3Q9Y5H0 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC20.16■□□□□ 0.82
PCDHGA3Q9Y5H0 AC120498.10-201ENST00000621827 505 ntBASIC20.16■□□□□ 0.82
PCDHGA3Q9Y5H0 MARS-234ENST00000630571 216 ntTSL 5 BASIC20.16■□□□□ 0.82
PCDHGA3Q9Y5H0 MARS-235ENST00000630803 183 ntTSL 3 BASIC20.16■□□□□ 0.82
PCDHGA3Q9Y5H0 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PCDHGA3Q9Y5H0 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PCDHGA3Q9Y5H0 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PCDHGA3Q9Y5H0 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
PCDHGA3Q9Y5H0 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PCDHGA3Q9Y5H0 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PCDHGA3Q9Y5H0 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC20.16■□□□□ 0.82
PCDHGA3Q9Y5H0 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
PCDHGA3Q9Y5H0 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PCDHGA3Q9Y5H0 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCDHGA3Q9Y5H0 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCDHGA3Q9Y5H0 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCDHGA3Q9Y5H0 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PCDHGA3Q9Y5H0 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCDHGA3Q9Y5H0 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCDHGA3Q9Y5H0 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCDHGA3Q9Y5H0 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCDHGA3Q9Y5H0 MIPEPP3-201ENST00000412105 444 ntBASIC20.15■□□□□ 0.82
PCDHGA3Q9Y5H0 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PCDHGA3Q9Y5H0 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC20.15■□□□□ 0.82
PCDHGA3Q9Y5H0 AC008175.2-201ENST00000612840 297 ntBASIC20.15■□□□□ 0.82
PCDHGA3Q9Y5H0 TBCB-214ENST00000629269 413 ntTSL 5 BASIC20.15■□□□□ 0.82
PCDHGA3Q9Y5H0 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCDHGA3Q9Y5H0 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCDHGA3Q9Y5H0 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC20.15■□□□□ 0.82
PCDHGA3Q9Y5H0 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
PCDHGA3Q9Y5H0 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
PCDHGA3Q9Y5H0 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PCDHGA3Q9Y5H0 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PCDHGA3Q9Y5H0 MKRN4P-201ENST00000444706 1521 ntBASIC20.14■□□□□ 0.81
PCDHGA3Q9Y5H0 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
PCDHGA3Q9Y5H0 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC20.14■□□□□ 0.81
PCDHGA3Q9Y5H0 POU5F1P4-201ENST00000413175 1085 ntBASIC20.14■□□□□ 0.81
PCDHGA3Q9Y5H0 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC20.14■□□□□ 0.81
PCDHGA3Q9Y5H0 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC20.14■□□□□ 0.81
PCDHGA3Q9Y5H0 AC098934.4-201ENST00000564127 592 ntBASIC20.14■□□□□ 0.81
PCDHGA3Q9Y5H0 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC20.14■□□□□ 0.81
PCDHGA3Q9Y5H0 AC069236.1-201ENST00000604339 616 ntBASIC20.14■□□□□ 0.81
PCDHGA3Q9Y5H0 AC008694.1-202ENST00000636953 945 ntBASIC20.14■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms