Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
ATG4BQ9Y4P1 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
ATG4BQ9Y4P1 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
ATG4BQ9Y4P1 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ATG4BQ9Y4P1 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ATG4BQ9Y4P1 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC19.73■□□□□ 0.75
ATG4BQ9Y4P1 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
ATG4BQ9Y4P1 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC19.72■□□□□ 0.75
ATG4BQ9Y4P1 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
ATG4BQ9Y4P1 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
ATG4BQ9Y4P1 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
ATG4BQ9Y4P1 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
ATG4BQ9Y4P1 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
ATG4BQ9Y4P1 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
ATG4BQ9Y4P1 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC19.72■□□□□ 0.75
ATG4BQ9Y4P1 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC19.72■□□□□ 0.75
ATG4BQ9Y4P1 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ATG4BQ9Y4P1 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC19.71■□□□□ 0.75
ATG4BQ9Y4P1 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ATG4BQ9Y4P1 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
ATG4BQ9Y4P1 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
ATG4BQ9Y4P1 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
ATG4BQ9Y4P1 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
ATG4BQ9Y4P1 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ATG4BQ9Y4P1 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ATG4BQ9Y4P1 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
ATG4BQ9Y4P1 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ATG4BQ9Y4P1 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC19.71■□□□□ 0.75
ATG4BQ9Y4P1 GXYLT1P2-201ENST00000433312 1230 ntBASIC19.71■□□□□ 0.75
ATG4BQ9Y4P1 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC19.71■□□□□ 0.75
ATG4BQ9Y4P1 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC19.71■□□□□ 0.75
ATG4BQ9Y4P1 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC19.71■□□□□ 0.75
ATG4BQ9Y4P1 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC19.71■□□□□ 0.75
ATG4BQ9Y4P1 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
ATG4BQ9Y4P1 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC19.71■□□□□ 0.75
ATG4BQ9Y4P1 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ATG4BQ9Y4P1 PKD1P6-201ENST00000343738 4769 ntBASIC19.71■□□□□ 0.75
ATG4BQ9Y4P1 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
ATG4BQ9Y4P1 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
ATG4BQ9Y4P1 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC19.7■□□□□ 0.74
ATG4BQ9Y4P1 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
ATG4BQ9Y4P1 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
ATG4BQ9Y4P1 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
ATG4BQ9Y4P1 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
ATG4BQ9Y4P1 STX7-201ENST00000367937 1090 ntTSL 5 BASIC19.7■□□□□ 0.74
ATG4BQ9Y4P1 DBI-210ENST00000542275 757 ntTSL 5 BASIC19.7■□□□□ 0.74
ATG4BQ9Y4P1 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC19.7■□□□□ 0.74
ATG4BQ9Y4P1 AC022517.1-201ENST00000592429 346 ntBASIC19.7■□□□□ 0.74
ATG4BQ9Y4P1 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC19.7■□□□□ 0.74
ATG4BQ9Y4P1 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC19.7■□□□□ 0.74
ATG4BQ9Y4P1 UBE2DNL-204ENST00000602536 740 ntBASIC19.7■□□□□ 0.74
ATG4BQ9Y4P1 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
ATG4BQ9Y4P1 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
ATG4BQ9Y4P1 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
ATG4BQ9Y4P1 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
ATG4BQ9Y4P1 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC19.69■□□□□ 0.74
ATG4BQ9Y4P1 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ATG4BQ9Y4P1 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
ATG4BQ9Y4P1 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC19.69■□□□□ 0.74
ATG4BQ9Y4P1 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
ATG4BQ9Y4P1 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC19.69■□□□□ 0.74
ATG4BQ9Y4P1 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC19.69■□□□□ 0.74
ATG4BQ9Y4P1 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC19.69■□□□□ 0.74
ATG4BQ9Y4P1 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC19.69■□□□□ 0.74
ATG4BQ9Y4P1 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC19.69■□□□□ 0.74
ATG4BQ9Y4P1 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC19.69■□□□□ 0.74
ATG4BQ9Y4P1 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
ATG4BQ9Y4P1 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
ATG4BQ9Y4P1 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
ATG4BQ9Y4P1 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
ATG4BQ9Y4P1 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
ATG4BQ9Y4P1 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
ATG4BQ9Y4P1 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
ATG4BQ9Y4P1 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC19.68■□□□□ 0.74
ATG4BQ9Y4P1 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC19.68■□□□□ 0.74
ATG4BQ9Y4P1 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
ATG4BQ9Y4P1 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC19.68■□□□□ 0.74
ATG4BQ9Y4P1 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC19.68■□□□□ 0.74
ATG4BQ9Y4P1 TFG-210ENST00000620299 1289 ntTSL 5 BASIC19.68■□□□□ 0.74
ATG4BQ9Y4P1 RARRES2P11-201ENST00000635158 484 ntBASIC19.68■□□□□ 0.74
ATG4BQ9Y4P1 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
ATG4BQ9Y4P1 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
ATG4BQ9Y4P1 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
ATG4BQ9Y4P1 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
ATG4BQ9Y4P1 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
ATG4BQ9Y4P1 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC19.67■□□□□ 0.74
ATG4BQ9Y4P1 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC19.67■□□□□ 0.74
ATG4BQ9Y4P1 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
ATG4BQ9Y4P1 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
ATG4BQ9Y4P1 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
ATG4BQ9Y4P1 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
ATG4BQ9Y4P1 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
ATG4BQ9Y4P1 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
ATG4BQ9Y4P1 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC19.67■□□□□ 0.74
ATG4BQ9Y4P1 AC137761.2-201ENST00000561729 223 ntBASIC19.67■□□□□ 0.74
ATG4BQ9Y4P1 SLC7A5P1-201ENST00000568957 537 ntBASIC19.67■□□□□ 0.74
ATG4BQ9Y4P1 AC145350.3-201ENST00000569033 163 ntBASIC19.67■□□□□ 0.74
ATG4BQ9Y4P1 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC19.67■□□□□ 0.74
ATG4BQ9Y4P1 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
ATG4BQ9Y4P1 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms