Protein–RNA interactions for Protein: Q9NSD5

SLC6A13, Sodium- and chloride-dependent GABA transporter 2, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A13Q9NSD5 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SLC6A13Q9NSD5 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
SLC6A13Q9NSD5 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC19.67■□□□□ 0.74
SLC6A13Q9NSD5 RNF146-206ENST00000480444 843 ntTSL 2 BASIC19.67■□□□□ 0.74
SLC6A13Q9NSD5 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC19.67■□□□□ 0.74
SLC6A13Q9NSD5 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC19.67■□□□□ 0.74
SLC6A13Q9NSD5 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
SLC6A13Q9NSD5 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SLC6A13Q9NSD5 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SLC6A13Q9NSD5 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
SLC6A13Q9NSD5 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
SLC6A13Q9NSD5 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC19.66■□□□□ 0.74
SLC6A13Q9NSD5 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SLC6A13Q9NSD5 PEMT-206ENST00000435340 960 ntTSL 5 BASIC19.66■□□□□ 0.74
SLC6A13Q9NSD5 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC19.66■□□□□ 0.74
SLC6A13Q9NSD5 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SLC6A13Q9NSD5 AC007225.1-201ENST00000566331 1836 ntBASIC19.66■□□□□ 0.74
SLC6A13Q9NSD5 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
SLC6A13Q9NSD5 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC19.66■□□□□ 0.74
SLC6A13Q9NSD5 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
SLC6A13Q9NSD5 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SLC6A13Q9NSD5 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SLC6A13Q9NSD5 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC19.66■□□□□ 0.74
SLC6A13Q9NSD5 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SLC6A13Q9NSD5 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SLC6A13Q9NSD5 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
SLC6A13Q9NSD5 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC19.65■□□□□ 0.74
SLC6A13Q9NSD5 MIR572-201ENST00000384983 95 ntBASIC19.65■□□□□ 0.74
SLC6A13Q9NSD5 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC19.65■□□□□ 0.74
SLC6A13Q9NSD5 AC110285.6-201ENST00000617652 491 ntBASIC19.65■□□□□ 0.74
SLC6A13Q9NSD5 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
SLC6A13Q9NSD5 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
SLC6A13Q9NSD5 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC19.65■□□□□ 0.74
SLC6A13Q9NSD5 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SLC6A13Q9NSD5 AC008406.3-201ENST00000620001 1374 ntBASIC19.65■□□□□ 0.74
SLC6A13Q9NSD5 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC19.65■□□□□ 0.74
SLC6A13Q9NSD5 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC19.65■□□□□ 0.74
SLC6A13Q9NSD5 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SLC6A13Q9NSD5 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC19.65■□□□□ 0.74
SLC6A13Q9NSD5 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SLC6A13Q9NSD5 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SLC6A13Q9NSD5 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
SLC6A13Q9NSD5 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC19.64■□□□□ 0.74
SLC6A13Q9NSD5 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC19.64■□□□□ 0.74
SLC6A13Q9NSD5 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC19.64■□□□□ 0.74
SLC6A13Q9NSD5 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SLC6A13Q9NSD5 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SLC6A13Q9NSD5 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC19.64■□□□□ 0.73
SLC6A13Q9NSD5 FXN-202ENST00000396364 980 ntTSL 5 BASIC19.64■□□□□ 0.73
SLC6A13Q9NSD5 MIR939-201ENST00000401314 82 ntBASIC19.64■□□□□ 0.73
SLC6A13Q9NSD5 MFF-208ENST00000409616 1247 ntTSL 5 BASIC19.64■□□□□ 0.73
SLC6A13Q9NSD5 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC19.64■□□□□ 0.73
SLC6A13Q9NSD5 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SLC6A13Q9NSD5 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC19.64■□□□□ 0.73
SLC6A13Q9NSD5 AL031432.3-201ENST00000607698 485 ntBASIC19.64■□□□□ 0.73
SLC6A13Q9NSD5 BID-203ENST00000399765 1879 ntTSL 2 BASIC19.64■□□□□ 0.73
SLC6A13Q9NSD5 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SLC6A13Q9NSD5 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC19.64■□□□□ 0.73
SLC6A13Q9NSD5 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC19.64■□□□□ 0.73
SLC6A13Q9NSD5 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.73
SLC6A13Q9NSD5 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SLC6A13Q9NSD5 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC19.64■□□□□ 0.73
SLC6A13Q9NSD5 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SLC6A13Q9NSD5 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SLC6A13Q9NSD5 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.64■□□□□ 0.73
SLC6A13Q9NSD5 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SLC6A13Q9NSD5 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC19.63■□□□□ 0.73
SLC6A13Q9NSD5 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SLC6A13Q9NSD5 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SLC6A13Q9NSD5 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SLC6A13Q9NSD5 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC19.63■□□□□ 0.73
SLC6A13Q9NSD5 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC19.63■□□□□ 0.73
SLC6A13Q9NSD5 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SLC6A13Q9NSD5 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SLC6A13Q9NSD5 EDA-201ENST00000338901 1233 ntBASIC19.63■□□□□ 0.73
SLC6A13Q9NSD5 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SLC6A13Q9NSD5 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC19.63■□□□□ 0.73
SLC6A13Q9NSD5 AF213884.3-201ENST00000563833 479 ntBASIC19.63■□□□□ 0.73
SLC6A13Q9NSD5 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SLC6A13Q9NSD5 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SLC6A13Q9NSD5 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SLC6A13Q9NSD5 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
SLC6A13Q9NSD5 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SLC6A13Q9NSD5 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SLC6A13Q9NSD5 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC19.62■□□□□ 0.73
SLC6A13Q9NSD5 AC061975.6-201ENST00000579045 1553 ntBASIC19.62■□□□□ 0.73
SLC6A13Q9NSD5 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SLC6A13Q9NSD5 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC19.62■□□□□ 0.73
SLC6A13Q9NSD5 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC19.62■□□□□ 0.73
SLC6A13Q9NSD5 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC19.62■□□□□ 0.73
SLC6A13Q9NSD5 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC19.62■□□□□ 0.73
SLC6A13Q9NSD5 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SLC6A13Q9NSD5 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
SLC6A13Q9NSD5 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
SLC6A13Q9NSD5 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
SLC6A13Q9NSD5 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SLC6A13Q9NSD5 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SLC6A13Q9NSD5 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
SLC6A13Q9NSD5 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC19.61■□□□□ 0.73
SLC6A13Q9NSD5 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms