Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC22.42■■□□□ 1.18
SIX2Q9NPC8 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC22.42■■□□□ 1.18
SIX2Q9NPC8 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC22.42■■□□□ 1.18
SIX2Q9NPC8 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC22.42■■□□□ 1.18
SIX2Q9NPC8 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC22.42■■□□□ 1.18
SIX2Q9NPC8 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
SIX2Q9NPC8 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC22.42■■□□□ 1.18
SIX2Q9NPC8 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC22.42■■□□□ 1.18
SIX2Q9NPC8 AC008175.2-201ENST00000612840 297 ntBASIC22.42■■□□□ 1.18
SIX2Q9NPC8 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
SIX2Q9NPC8 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC22.42■■□□□ 1.18
SIX2Q9NPC8 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
SIX2Q9NPC8 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC22.41■■□□□ 1.18
SIX2Q9NPC8 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
SIX2Q9NPC8 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
SIX2Q9NPC8 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC22.41■■□□□ 1.18
SIX2Q9NPC8 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
SIX2Q9NPC8 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
SIX2Q9NPC8 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
SIX2Q9NPC8 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC22.41■■□□□ 1.18
SIX2Q9NPC8 KRT18P14-201ENST00000534205 1250 ntBASIC22.41■■□□□ 1.18
SIX2Q9NPC8 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC22.41■■□□□ 1.18
SIX2Q9NPC8 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC22.41■■□□□ 1.18
SIX2Q9NPC8 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
SIX2Q9NPC8 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
SIX2Q9NPC8 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
SIX2Q9NPC8 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC22.41■■□□□ 1.18
SIX2Q9NPC8 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC22.41■■□□□ 1.18
SIX2Q9NPC8 LINC01006-201ENST00000333319 2292 ntBASIC22.41■■□□□ 1.18
SIX2Q9NPC8 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
SIX2Q9NPC8 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
SIX2Q9NPC8 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
SIX2Q9NPC8 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC22.4■■□□□ 1.18
SIX2Q9NPC8 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC22.4■■□□□ 1.18
SIX2Q9NPC8 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
SIX2Q9NPC8 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
SIX2Q9NPC8 GUK1-205ENST00000366722 850 ntTSL 3 BASIC22.4■■□□□ 1.18
SIX2Q9NPC8 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
SIX2Q9NPC8 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
SIX2Q9NPC8 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC22.4■■□□□ 1.18
SIX2Q9NPC8 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC22.4■■□□□ 1.18
SIX2Q9NPC8 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC22.4■■□□□ 1.18
SIX2Q9NPC8 AC004854.2-201ENST00000608450 1441 ntBASIC22.4■■□□□ 1.18
SIX2Q9NPC8 AC073130.3-201ENST00000624389 2278 ntBASIC22.4■■□□□ 1.18
SIX2Q9NPC8 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC22.39■■□□□ 1.18
SIX2Q9NPC8 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC22.39■■□□□ 1.18
SIX2Q9NPC8 SLC7A5P2-201ENST00000553010 536 ntBASIC22.39■■□□□ 1.17
SIX2Q9NPC8 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC22.39■■□□□ 1.17
SIX2Q9NPC8 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC22.39■■□□□ 1.17
SIX2Q9NPC8 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC22.39■■□□□ 1.17
SIX2Q9NPC8 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
SIX2Q9NPC8 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
SIX2Q9NPC8 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC22.39■■□□□ 1.17
SIX2Q9NPC8 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
SIX2Q9NPC8 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC22.39■■□□□ 1.17
SIX2Q9NPC8 LINC01521-201ENST00000504184 1943 ntBASIC22.39■■□□□ 1.17
SIX2Q9NPC8 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
SIX2Q9NPC8 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
SIX2Q9NPC8 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
SIX2Q9NPC8 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC22.38■■□□□ 1.17
SIX2Q9NPC8 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
SIX2Q9NPC8 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC22.38■■□□□ 1.17
SIX2Q9NPC8 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
SIX2Q9NPC8 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
SIX2Q9NPC8 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
SIX2Q9NPC8 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
SIX2Q9NPC8 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
SIX2Q9NPC8 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC22.38■■□□□ 1.17
SIX2Q9NPC8 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC22.38■■□□□ 1.17
SIX2Q9NPC8 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC22.38■■□□□ 1.17
SIX2Q9NPC8 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
SIX2Q9NPC8 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC22.38■■□□□ 1.17
SIX2Q9NPC8 AP001160.3-201ENST00000601484 763 ntBASIC22.38■■□□□ 1.17
SIX2Q9NPC8 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC22.38■■□□□ 1.17
SIX2Q9NPC8 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC22.38■■□□□ 1.17
SIX2Q9NPC8 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
SIX2Q9NPC8 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC22.38■■□□□ 1.17
SIX2Q9NPC8 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
SIX2Q9NPC8 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
SIX2Q9NPC8 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
SIX2Q9NPC8 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
SIX2Q9NPC8 KRT16P2-201ENST00000414673 1423 ntBASIC22.38■■□□□ 1.17
SIX2Q9NPC8 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
SIX2Q9NPC8 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
SIX2Q9NPC8 AC073314.1-201ENST00000568729 2216 ntBASIC22.38■■□□□ 1.17
SIX2Q9NPC8 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC22.38■■□□□ 1.17
SIX2Q9NPC8 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
SIX2Q9NPC8 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC22.37■■□□□ 1.17
SIX2Q9NPC8 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC22.37■■□□□ 1.17
SIX2Q9NPC8 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC22.37■■□□□ 1.17
SIX2Q9NPC8 AC092667.1-201ENST00000434301 2586 ntBASIC22.37■■□□□ 1.17
SIX2Q9NPC8 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC22.37■■□□□ 1.17
SIX2Q9NPC8 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC22.37■■□□□ 1.17
SIX2Q9NPC8 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC22.37■■□□□ 1.17
SIX2Q9NPC8 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC22.37■■□□□ 1.17
SIX2Q9NPC8 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC22.37■■□□□ 1.17
SIX2Q9NPC8 LGR4-203ENST00000480977 492 ntTSL 2 BASIC22.37■■□□□ 1.17
SIX2Q9NPC8 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC22.37■■□□□ 1.17
SIX2Q9NPC8 DUX4L2-201ENST00000561772 1275 ntBASIC22.37■■□□□ 1.17
SIX2Q9NPC8 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC22.37■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms