Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC22.86■■□□□ 1.25
TRAIPQ9BWF2 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
TRAIPQ9BWF2 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC22.86■■□□□ 1.25
TRAIPQ9BWF2 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC22.86■■□□□ 1.25
TRAIPQ9BWF2 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC22.86■■□□□ 1.25
TRAIPQ9BWF2 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC22.86■■□□□ 1.25
TRAIPQ9BWF2 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
TRAIPQ9BWF2 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
TRAIPQ9BWF2 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
TRAIPQ9BWF2 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC22.85■■□□□ 1.25
TRAIPQ9BWF2 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC22.85■■□□□ 1.25
TRAIPQ9BWF2 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC22.85■■□□□ 1.25
TRAIPQ9BWF2 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC22.85■■□□□ 1.25
TRAIPQ9BWF2 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC22.85■■□□□ 1.25
TRAIPQ9BWF2 AC093787.1-201ENST00000450396 207 ntBASIC22.85■■□□□ 1.25
TRAIPQ9BWF2 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC22.85■■□□□ 1.25
TRAIPQ9BWF2 AC092118.2-201ENST00000613495 667 ntBASIC22.85■■□□□ 1.25
TRAIPQ9BWF2 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC22.85■■□□□ 1.25
TRAIPQ9BWF2 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC22.85■■□□□ 1.25
TRAIPQ9BWF2 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC22.85■■□□□ 1.25
TRAIPQ9BWF2 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC22.85■■□□□ 1.25
TRAIPQ9BWF2 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC22.85■■□□□ 1.25
TRAIPQ9BWF2 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC22.85■■□□□ 1.25
TRAIPQ9BWF2 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC22.85■■□□□ 1.25
TRAIPQ9BWF2 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC22.85■■□□□ 1.25
TRAIPQ9BWF2 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
TRAIPQ9BWF2 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC22.84■■□□□ 1.25
TRAIPQ9BWF2 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC22.84■■□□□ 1.25
TRAIPQ9BWF2 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC22.84■■□□□ 1.25
TRAIPQ9BWF2 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC22.84■■□□□ 1.25
TRAIPQ9BWF2 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC22.84■■□□□ 1.25
TRAIPQ9BWF2 AC016405.3-201ENST00000607710 860 ntBASIC22.84■■□□□ 1.25
TRAIPQ9BWF2 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
TRAIPQ9BWF2 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC22.83■■□□□ 1.25
TRAIPQ9BWF2 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC22.83■■□□□ 1.25
TRAIPQ9BWF2 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC22.83■■□□□ 1.25
TRAIPQ9BWF2 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
TRAIPQ9BWF2 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC22.83■■□□□ 1.25
TRAIPQ9BWF2 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC22.83■■□□□ 1.25
TRAIPQ9BWF2 PPP1R14BP2-201ENST00000426284 444 ntBASIC22.83■■□□□ 1.25
TRAIPQ9BWF2 RARRES2P4-201ENST00000514074 484 ntBASIC22.83■■□□□ 1.25
TRAIPQ9BWF2 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC22.83■■□□□ 1.25
TRAIPQ9BWF2 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC22.83■■□□□ 1.25
TRAIPQ9BWF2 AC098934.4-201ENST00000564127 592 ntBASIC22.83■■□□□ 1.25
TRAIPQ9BWF2 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC22.83■■□□□ 1.25
TRAIPQ9BWF2 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC22.83■■□□□ 1.25
TRAIPQ9BWF2 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC22.83■■□□□ 1.25
TRAIPQ9BWF2 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC22.83■■□□□ 1.24
TRAIPQ9BWF2 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
TRAIPQ9BWF2 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC22.82■■□□□ 1.24
TRAIPQ9BWF2 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC22.82■■□□□ 1.24
TRAIPQ9BWF2 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC22.82■■□□□ 1.24
TRAIPQ9BWF2 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
TRAIPQ9BWF2 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
TRAIPQ9BWF2 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC22.82■■□□□ 1.24
TRAIPQ9BWF2 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC22.82■■□□□ 1.24
TRAIPQ9BWF2 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC22.82■■□□□ 1.24
TRAIPQ9BWF2 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC22.82■■□□□ 1.24
TRAIPQ9BWF2 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC22.82■■□□□ 1.24
TRAIPQ9BWF2 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
TRAIPQ9BWF2 PBX1-209ENST00000485769 834 ntTSL 2 BASIC22.82■■□□□ 1.24
TRAIPQ9BWF2 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC22.82■■□□□ 1.24
TRAIPQ9BWF2 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC22.82■■□□□ 1.24
TRAIPQ9BWF2 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC22.82■■□□□ 1.24
TRAIPQ9BWF2 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC22.82■■□□□ 1.24
TRAIPQ9BWF2 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
TRAIPQ9BWF2 AC026471.6-201ENST00000622954 1905 ntBASIC22.82■■□□□ 1.24
TRAIPQ9BWF2 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC22.82■■□□□ 1.24
TRAIPQ9BWF2 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC22.82■■□□□ 1.24
TRAIPQ9BWF2 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC22.81■■□□□ 1.24
TRAIPQ9BWF2 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
TRAIPQ9BWF2 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC22.81■■□□□ 1.24
TRAIPQ9BWF2 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
TRAIPQ9BWF2 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC22.81■■□□□ 1.24
TRAIPQ9BWF2 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
TRAIPQ9BWF2 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
TRAIPQ9BWF2 C11orf96-202ENST00000528572 1834 ntBASIC22.8■■□□□ 1.24
TRAIPQ9BWF2 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC22.8■■□□□ 1.24
TRAIPQ9BWF2 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
TRAIPQ9BWF2 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
TRAIPQ9BWF2 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
TRAIPQ9BWF2 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
TRAIPQ9BWF2 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
TRAIPQ9BWF2 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC22.8■■□□□ 1.24
TRAIPQ9BWF2 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC22.8■■□□□ 1.24
TRAIPQ9BWF2 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC22.8■■□□□ 1.24
TRAIPQ9BWF2 TMEM191A-211ENST00000637163 1067 ntBASIC22.8■■□□□ 1.24
TRAIPQ9BWF2 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC22.8■■□□□ 1.24
TRAIPQ9BWF2 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC22.8■■□□□ 1.24
TRAIPQ9BWF2 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC22.8■■□□□ 1.24
TRAIPQ9BWF2 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
TRAIPQ9BWF2 AC007375.3-201ENST00000600936 2314 ntBASIC22.8■■□□□ 1.24
TRAIPQ9BWF2 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC22.8■■□□□ 1.24
TRAIPQ9BWF2 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC22.8■■□□□ 1.24
TRAIPQ9BWF2 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC22.79■■□□□ 1.24
TRAIPQ9BWF2 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC22.79■■□□□ 1.24
TRAIPQ9BWF2 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
TRAIPQ9BWF2 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
TRAIPQ9BWF2 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC22.79■■□□□ 1.24
TRAIPQ9BWF2 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC22.79■■□□□ 1.24
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms