Protein–RNA interactions for Protein: Q99758

ABCA3, ATP-binding cassette sub-family A member 3, humanhuman

Predictions only

Length 1,704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3Q99758 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
ABCA3Q99758 MTDHP1-201ENST00000605323 784 ntBASIC28.18■■■□□ 2.1
ABCA3Q99758 REXO1L12P-201ENST00000622156 912 ntBASIC28.18■■■□□ 2.1
ABCA3Q99758 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
ABCA3Q99758 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC28.17■■■□□ 2.1
ABCA3Q99758 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
ABCA3Q99758 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
ABCA3Q99758 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
ABCA3Q99758 CYP21A1P-202ENST00000354927 1481 ntBASIC28.17■■■□□ 2.1
ABCA3Q99758 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC28.17■■■□□ 2.1
ABCA3Q99758 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC28.17■■■□□ 2.1
ABCA3Q99758 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC28.17■■■□□ 2.1
ABCA3Q99758 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
ABCA3Q99758 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC28.17■■■□□ 2.1
ABCA3Q99758 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC28.17■■■□□ 2.1
ABCA3Q99758 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
ABCA3Q99758 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
ABCA3Q99758 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC28.16■■■□□ 2.1
ABCA3Q99758 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC28.16■■■□□ 2.1
ABCA3Q99758 AC239809.2-201ENST00000415381 517 ntBASIC28.16■■■□□ 2.1
ABCA3Q99758 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
ABCA3Q99758 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC28.16■■■□□ 2.1
ABCA3Q99758 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC28.16■■■□□ 2.1
ABCA3Q99758 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC28.16■■■□□ 2.1
ABCA3Q99758 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC28.16■■■□□ 2.1
ABCA3Q99758 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
ABCA3Q99758 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC28.16■■■□□ 2.1
ABCA3Q99758 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC28.16■■■□□ 2.1
ABCA3Q99758 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
ABCA3Q99758 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC28.15■■■□□ 2.1
ABCA3Q99758 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC28.15■■■□□ 2.1
ABCA3Q99758 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
ABCA3Q99758 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC28.15■■■□□ 2.1
ABCA3Q99758 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC28.15■■■□□ 2.1
ABCA3Q99758 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC28.15■■■□□ 2.1
ABCA3Q99758 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC28.15■■■□□ 2.1
ABCA3Q99758 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
ABCA3Q99758 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
ABCA3Q99758 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC28.14■■■□□ 2.1
ABCA3Q99758 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
ABCA3Q99758 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
ABCA3Q99758 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
ABCA3Q99758 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC28.14■■■□□ 2.1
ABCA3Q99758 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC28.14■■■□□ 2.1
ABCA3Q99758 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC28.14■■■□□ 2.1
ABCA3Q99758 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC28.14■■■□□ 2.1
ABCA3Q99758 C11orf96-202ENST00000528572 1834 ntBASIC28.14■■■□□ 2.09
ABCA3Q99758 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.09
ABCA3Q99758 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
ABCA3Q99758 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC28.13■■■□□ 2.09
ABCA3Q99758 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC28.13■■■□□ 2.09
ABCA3Q99758 MFF-205ENST00000354503 1085 ntTSL 2 BASIC28.13■■■□□ 2.09
ABCA3Q99758 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC28.13■■■□□ 2.09
ABCA3Q99758 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC28.13■■■□□ 2.09
ABCA3Q99758 AC097493.4-201ENST00000641197 219 ntBASIC28.13■■■□□ 2.09
ABCA3Q99758 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC28.13■■■□□ 2.09
ABCA3Q99758 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC28.13■■■□□ 2.09
ABCA3Q99758 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC28.13■■■□□ 2.09
ABCA3Q99758 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC28.12■■■□□ 2.09
ABCA3Q99758 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC28.12■■■□□ 2.09
ABCA3Q99758 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC28.12■■■□□ 2.09
ABCA3Q99758 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC28.12■■■□□ 2.09
ABCA3Q99758 AC133561.5-201ENST00000635547 218 ntBASIC28.12■■■□□ 2.09
ABCA3Q99758 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
ABCA3Q99758 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
ABCA3Q99758 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
ABCA3Q99758 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC28.12■■■□□ 2.09
ABCA3Q99758 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC28.12■■■□□ 2.09
ABCA3Q99758 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC28.12■■■□□ 2.09
ABCA3Q99758 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
ABCA3Q99758 TSPY15P-201ENST00000457163 923 ntBASIC28.12■■■□□ 2.09
ABCA3Q99758 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
ABCA3Q99758 MIR4785-201ENST00000585005 73 ntBASIC28.12■■■□□ 2.09
ABCA3Q99758 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
ABCA3Q99758 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC28.11■■■□□ 2.09
ABCA3Q99758 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC28.11■■■□□ 2.09
ABCA3Q99758 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
ABCA3Q99758 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC28.11■■■□□ 2.09
ABCA3Q99758 HES2-205ENST00000487437 968 ntTSL 3 BASIC28.11■■■□□ 2.09
ABCA3Q99758 PENK-204ENST00000518770 863 ntTSL 2 BASIC28.11■■■□□ 2.09
ABCA3Q99758 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC28.11■■■□□ 2.09
ABCA3Q99758 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC28.11■■■□□ 2.09
ABCA3Q99758 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC28.11■■■□□ 2.09
ABCA3Q99758 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC28.11■■■□□ 2.09
ABCA3Q99758 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC28.11■■■□□ 2.09
ABCA3Q99758 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
ABCA3Q99758 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
ABCA3Q99758 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC28.1■■■□□ 2.09
ABCA3Q99758 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC28.1■■■□□ 2.09
ABCA3Q99758 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC28.1■■■□□ 2.09
ABCA3Q99758 NFE2L3P1-201ENST00000588207 1959 ntBASIC28.1■■■□□ 2.09
ABCA3Q99758 AC087633.2-202ENST00000565166 1439 ntBASIC28.1■■■□□ 2.09
ABCA3Q99758 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
ABCA3Q99758 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
ABCA3Q99758 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC28.09■■■□□ 2.09
ABCA3Q99758 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC28.09■■■□□ 2.09
ABCA3Q99758 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC28.09■■■□□ 2.09
ABCA3Q99758 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
ABCA3Q99758 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC28.09■■■□□ 2.09
ABCA3Q99758 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC28.09■■■□□ 2.09
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms