Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
CDX2Q99626 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC22.14■■□□□ 1.13
CDX2Q99626 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
CDX2Q99626 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
CDX2Q99626 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC22.13■■□□□ 1.13
CDX2Q99626 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CDX2Q99626 RARG-204ENST00000543726 1779 ntTSL 2 BASIC22.13■■□□□ 1.13
CDX2Q99626 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CDX2Q99626 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC22.13■■□□□ 1.13
CDX2Q99626 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CDX2Q99626 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CDX2Q99626 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
CDX2Q99626 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC22.13■■□□□ 1.13
CDX2Q99626 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC22.13■■□□□ 1.13
CDX2Q99626 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC22.13■■□□□ 1.13
CDX2Q99626 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC22.13■■□□□ 1.13
CDX2Q99626 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC22.13■■□□□ 1.13
CDX2Q99626 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC22.13■■□□□ 1.13
CDX2Q99626 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC22.13■■□□□ 1.13
CDX2Q99626 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC22.13■■□□□ 1.13
CDX2Q99626 CFL2-205ENST00000555765 632 ntTSL 2 BASIC22.13■■□□□ 1.13
CDX2Q99626 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC22.13■■□□□ 1.13
CDX2Q99626 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC22.13■■□□□ 1.13
CDX2Q99626 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC22.13■■□□□ 1.13
CDX2Q99626 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC22.13■■□□□ 1.13
CDX2Q99626 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC22.13■■□□□ 1.13
CDX2Q99626 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
CDX2Q99626 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
CDX2Q99626 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
CDX2Q99626 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
CDX2Q99626 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC22.12■■□□□ 1.13
CDX2Q99626 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC22.12■■□□□ 1.13
CDX2Q99626 VMO1-204ENST00000441199 741 ntTSL 2 BASIC22.12■■□□□ 1.13
CDX2Q99626 AC104076.2-201ENST00000448912 469 ntBASIC22.12■■□□□ 1.13
CDX2Q99626 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC22.12■■□□□ 1.13
CDX2Q99626 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC22.12■■□□□ 1.13
CDX2Q99626 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC22.12■■□□□ 1.13
CDX2Q99626 KRT126P-201ENST00000549467 1181 ntBASIC22.12■■□□□ 1.13
CDX2Q99626 DUT-205ENST00000558813 769 ntTSL 2 BASIC22.12■■□□□ 1.13
CDX2Q99626 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC22.12■■□□□ 1.13
CDX2Q99626 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC22.12■■□□□ 1.13
CDX2Q99626 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC22.12■■□□□ 1.13
CDX2Q99626 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC22.12■■□□□ 1.13
CDX2Q99626 AC073508.3-201ENST00000619697 1419 ntBASIC22.12■■□□□ 1.13
CDX2Q99626 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
CDX2Q99626 LINC01568-207ENST00000641790 1380 ntBASIC22.12■■□□□ 1.13
CDX2Q99626 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CDX2Q99626 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
CDX2Q99626 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC22.11■■□□□ 1.13
CDX2Q99626 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC22.11■■□□□ 1.13
CDX2Q99626 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
CDX2Q99626 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
CDX2Q99626 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
CDX2Q99626 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC22.11■■□□□ 1.13
CDX2Q99626 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC22.11■■□□□ 1.13
CDX2Q99626 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
CDX2Q99626 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC22.11■■□□□ 1.13
CDX2Q99626 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC22.11■■□□□ 1.13
CDX2Q99626 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
CDX2Q99626 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC22.11■■□□□ 1.13
CDX2Q99626 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC22.11■■□□□ 1.13
CDX2Q99626 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC22.11■■□□□ 1.13
CDX2Q99626 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
CDX2Q99626 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
CDX2Q99626 LINC01960-201ENST00000563759 1884 ntBASIC22.11■■□□□ 1.13
CDX2Q99626 UPK3BP1-201ENST00000428678 509 ntBASIC22.1■■□□□ 1.13
CDX2Q99626 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC22.1■■□□□ 1.13
CDX2Q99626 TOLLIP-AS1-201ENST00000530897 939 ntBASIC22.1■■□□□ 1.13
CDX2Q99626 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC22.1■■□□□ 1.13
CDX2Q99626 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CDX2Q99626 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
CDX2Q99626 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC22.09■■□□□ 1.13
CDX2Q99626 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CDX2Q99626 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC22.09■■□□□ 1.13
CDX2Q99626 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CDX2Q99626 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CDX2Q99626 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC22.09■■□□□ 1.13
CDX2Q99626 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
CDX2Q99626 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC22.09■■□□□ 1.13
CDX2Q99626 NMU-205ENST00000511469 756 ntTSL 3 BASIC22.09■■□□□ 1.13
CDX2Q99626 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC22.09■■□□□ 1.13
CDX2Q99626 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC22.09■■□□□ 1.13
CDX2Q99626 AC006557.6-201ENST00000623071 864 ntBASIC22.09■■□□□ 1.13
CDX2Q99626 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC22.09■■□□□ 1.13
CDX2Q99626 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
CDX2Q99626 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC22.09■■□□□ 1.13
CDX2Q99626 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CDX2Q99626 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
CDX2Q99626 AL121749.1-202ENST00000609313 2153 ntBASIC22.08■■□□□ 1.13
CDX2Q99626 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
CDX2Q99626 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC22.08■■□□□ 1.13
CDX2Q99626 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC22.08■■□□□ 1.13
CDX2Q99626 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
CDX2Q99626 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC22.08■■□□□ 1.13
CDX2Q99626 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC22.08■■□□□ 1.13
CDX2Q99626 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC22.08■■□□□ 1.13
CDX2Q99626 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC22.08■■□□□ 1.13
CDX2Q99626 METTL23-204ENST00000586752 904 ntTSL 2 BASIC22.08■■□□□ 1.13
CDX2Q99626 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC22.08■■□□□ 1.13
CDX2Q99626 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms