Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
LRCH3Q96II8 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
LRCH3Q96II8 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
LRCH3Q96II8 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
LRCH3Q96II8 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
LRCH3Q96II8 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC22.71■■□□□ 1.23
LRCH3Q96II8 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC22.71■■□□□ 1.23
LRCH3Q96II8 AP003733.4-201ENST00000623785 1697 ntBASIC22.71■■□□□ 1.23
LRCH3Q96II8 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
LRCH3Q96II8 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC22.71■■□□□ 1.23
LRCH3Q96II8 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC22.71■■□□□ 1.23
LRCH3Q96II8 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
LRCH3Q96II8 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
LRCH3Q96II8 MFF-205ENST00000354503 1085 ntTSL 2 BASIC22.71■■□□□ 1.23
LRCH3Q96II8 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC22.71■■□□□ 1.23
LRCH3Q96II8 KRT18P57-201ENST00000443599 1254 ntBASIC22.71■■□□□ 1.23
LRCH3Q96II8 NTF6B-201ENST00000591913 560 ntBASIC22.71■■□□□ 1.23
LRCH3Q96II8 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
LRCH3Q96II8 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
LRCH3Q96II8 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC22.71■■□□□ 1.23
LRCH3Q96II8 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
LRCH3Q96II8 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
LRCH3Q96II8 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
LRCH3Q96II8 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC22.71■■□□□ 1.23
LRCH3Q96II8 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC22.71■■□□□ 1.23
LRCH3Q96II8 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
LRCH3Q96II8 EED-207ENST00000528180 1745 ntTSL 5 BASIC22.71■■□□□ 1.23
LRCH3Q96II8 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
LRCH3Q96II8 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.23
LRCH3Q96II8 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC22.7■■□□□ 1.23
LRCH3Q96II8 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
LRCH3Q96II8 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC22.7■■□□□ 1.22
LRCH3Q96II8 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC22.7■■□□□ 1.22
LRCH3Q96II8 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC22.7■■□□□ 1.22
LRCH3Q96II8 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC22.7■■□□□ 1.22
LRCH3Q96II8 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC22.7■■□□□ 1.22
LRCH3Q96II8 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC22.7■■□□□ 1.22
LRCH3Q96II8 KLF2-202ENST00000592003 564 ntTSL 3 BASIC22.7■■□□□ 1.22
LRCH3Q96II8 AC008175.2-201ENST00000612840 297 ntBASIC22.7■■□□□ 1.22
LRCH3Q96II8 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC22.7■■□□□ 1.22
LRCH3Q96II8 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
LRCH3Q96II8 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC22.7■■□□□ 1.22
LRCH3Q96II8 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC22.7■■□□□ 1.22
LRCH3Q96II8 AL353803.4-201ENST00000565882 1934 ntBASIC22.7■■□□□ 1.22
LRCH3Q96II8 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC22.69■■□□□ 1.22
LRCH3Q96II8 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC22.69■■□□□ 1.22
LRCH3Q96II8 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC22.69■■□□□ 1.22
LRCH3Q96II8 MTDHP1-201ENST00000605323 784 ntBASIC22.69■■□□□ 1.22
LRCH3Q96II8 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC22.69■■□□□ 1.22
LRCH3Q96II8 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC22.68■■□□□ 1.22
LRCH3Q96II8 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC22.68■■□□□ 1.22
LRCH3Q96II8 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
LRCH3Q96II8 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
LRCH3Q96II8 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
LRCH3Q96II8 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC22.68■■□□□ 1.22
LRCH3Q96II8 AC133681.1-201ENST00000465482 601 ntBASIC22.68■■□□□ 1.22
LRCH3Q96II8 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC22.68■■□□□ 1.22
LRCH3Q96II8 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC22.68■■□□□ 1.22
LRCH3Q96II8 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC22.68■■□□□ 1.22
LRCH3Q96II8 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
LRCH3Q96II8 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
LRCH3Q96II8 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC22.67■■□□□ 1.22
LRCH3Q96II8 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
LRCH3Q96II8 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
LRCH3Q96II8 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
LRCH3Q96II8 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC22.67■■□□□ 1.22
LRCH3Q96II8 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC22.67■■□□□ 1.22
LRCH3Q96II8 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
LRCH3Q96II8 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC22.66■■□□□ 1.22
LRCH3Q96II8 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
LRCH3Q96II8 LINC00543-201ENST00000567234 1845 ntBASIC22.66■■□□□ 1.22
LRCH3Q96II8 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
LRCH3Q96II8 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC22.66■■□□□ 1.22
LRCH3Q96II8 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
LRCH3Q96II8 AC087388.1-201ENST00000571370 1112 ntBASIC22.66■■□□□ 1.22
LRCH3Q96II8 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
LRCH3Q96II8 AC145285.6-201ENST00000604632 637 ntBASIC22.66■■□□□ 1.22
LRCH3Q96II8 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC22.66■■□□□ 1.22
LRCH3Q96II8 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
LRCH3Q96II8 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
LRCH3Q96II8 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
LRCH3Q96II8 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC22.65■■□□□ 1.22
LRCH3Q96II8 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC22.65■■□□□ 1.22
LRCH3Q96II8 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC22.65■■□□□ 1.22
LRCH3Q96II8 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
LRCH3Q96II8 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
LRCH3Q96II8 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC22.65■■□□□ 1.22
LRCH3Q96II8 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
LRCH3Q96II8 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
LRCH3Q96II8 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
LRCH3Q96II8 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
LRCH3Q96II8 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC22.65■■□□□ 1.22
LRCH3Q96II8 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.22
LRCH3Q96II8 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC22.64■■□□□ 1.22
LRCH3Q96II8 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC22.64■■□□□ 1.22
LRCH3Q96II8 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC22.64■■□□□ 1.22
LRCH3Q96II8 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC22.64■■□□□ 1.22
LRCH3Q96II8 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
LRCH3Q96II8 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
LRCH3Q96II8 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms