Protein–RNA interactions for Protein: Q8NCU1

CCDC197, Putative uncharacterized protein CCDC197, humanhuman

Predictions only

Length 140 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC197Q8NCU1 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC20.7■□□□□ 0.9
CCDC197Q8NCU1 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC197Q8NCU1 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC197Q8NCU1 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC197Q8NCU1 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
CCDC197Q8NCU1 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
CCDC197Q8NCU1 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC197Q8NCU1 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC197Q8NCU1 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
CCDC197Q8NCU1 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC197Q8NCU1 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC197Q8NCU1 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC20.69■□□□□ 0.9
CCDC197Q8NCU1 RPS2-202ENST00000526522 924 ntTSL 2 BASIC20.69■□□□□ 0.9
CCDC197Q8NCU1 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC20.69■□□□□ 0.9
CCDC197Q8NCU1 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC20.69■□□□□ 0.9
CCDC197Q8NCU1 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC197Q8NCU1 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
CCDC197Q8NCU1 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
CCDC197Q8NCU1 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC20.69■□□□□ 0.9
CCDC197Q8NCU1 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC20.68■□□□□ 0.9
CCDC197Q8NCU1 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC197Q8NCU1 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC197Q8NCU1 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC197Q8NCU1 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC197Q8NCU1 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC197Q8NCU1 AC121338.2-201ENST00000622535 1744 ntBASIC20.68■□□□□ 0.9
CCDC197Q8NCU1 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC20.68■□□□□ 0.9
CCDC197Q8NCU1 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC197Q8NCU1 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC197Q8NCU1 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
CCDC197Q8NCU1 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC20.68■□□□□ 0.9
CCDC197Q8NCU1 HYI-213ENST00000583037 1322 ntTSL 5 BASIC20.68■□□□□ 0.9
CCDC197Q8NCU1 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC197Q8NCU1 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
CCDC197Q8NCU1 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC197Q8NCU1 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC197Q8NCU1 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC197Q8NCU1 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC197Q8NCU1 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC197Q8NCU1 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC20.67■□□□□ 0.9
CCDC197Q8NCU1 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC197Q8NCU1 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC197Q8NCU1 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC197Q8NCU1 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC197Q8NCU1 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC20.67■□□□□ 0.9
CCDC197Q8NCU1 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC197Q8NCU1 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC20.67■□□□□ 0.9
CCDC197Q8NCU1 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC20.67■□□□□ 0.9
CCDC197Q8NCU1 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC197Q8NCU1 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
CCDC197Q8NCU1 AC129492.7-201ENST00000622992 756 ntBASIC20.67■□□□□ 0.9
CCDC197Q8NCU1 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
CCDC197Q8NCU1 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC20.67■□□□□ 0.9
CCDC197Q8NCU1 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
CCDC197Q8NCU1 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC197Q8NCU1 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC197Q8NCU1 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC20.67■□□□□ 0.9
CCDC197Q8NCU1 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC197Q8NCU1 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC197Q8NCU1 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC197Q8NCU1 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC20.67■□□□□ 0.9
CCDC197Q8NCU1 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC197Q8NCU1 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC197Q8NCU1 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC197Q8NCU1 AP000974.1-201ENST00000623909 2387 ntBASIC20.66■□□□□ 0.9
CCDC197Q8NCU1 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC197Q8NCU1 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC197Q8NCU1 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC197Q8NCU1 AC139795.1-202ENST00000500444 432 ntBASIC20.66■□□□□ 0.9
CCDC197Q8NCU1 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
CCDC197Q8NCU1 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC20.66■□□□□ 0.9
CCDC197Q8NCU1 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC197Q8NCU1 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC197Q8NCU1 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
CCDC197Q8NCU1 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC197Q8NCU1 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC197Q8NCU1 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC197Q8NCU1 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC197Q8NCU1 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC197Q8NCU1 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC20.65■□□□□ 0.9
CCDC197Q8NCU1 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC197Q8NCU1 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC20.65■□□□□ 0.9
CCDC197Q8NCU1 TNXA-203ENST00000507684 2038 ntBASIC20.65■□□□□ 0.9
CCDC197Q8NCU1 AC003102.1-202ENST00000563394 1796 ntBASIC20.65■□□□□ 0.9
CCDC197Q8NCU1 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
CCDC197Q8NCU1 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC197Q8NCU1 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC20.65■□□□□ 0.9
CCDC197Q8NCU1 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC197Q8NCU1 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC197Q8NCU1 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC197Q8NCU1 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC197Q8NCU1 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC197Q8NCU1 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC197Q8NCU1 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC197Q8NCU1 BID-203ENST00000399765 1879 ntTSL 2 BASIC20.64■□□□□ 0.9
CCDC197Q8NCU1 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC20.64■□□□□ 0.9
CCDC197Q8NCU1 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
CCDC197Q8NCU1 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
CCDC197Q8NCU1 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
CCDC197Q8NCU1 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms