Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 KRT17P1-201ENST00000399211 1546 ntBASIC18.84■□□□□ 0.61
RNFT1Q5M7Z0 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RNFT1Q5M7Z0 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
RNFT1Q5M7Z0 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RNFT1Q5M7Z0 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RNFT1Q5M7Z0 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RNFT1Q5M7Z0 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
RNFT1Q5M7Z0 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
RNFT1Q5M7Z0 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC18.84■□□□□ 0.61
RNFT1Q5M7Z0 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC18.84■□□□□ 0.61
RNFT1Q5M7Z0 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RNFT1Q5M7Z0 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
RNFT1Q5M7Z0 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RNFT1Q5M7Z0 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RNFT1Q5M7Z0 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
RNFT1Q5M7Z0 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
RNFT1Q5M7Z0 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC18.84■□□□□ 0.61
RNFT1Q5M7Z0 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
RNFT1Q5M7Z0 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
RNFT1Q5M7Z0 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
RNFT1Q5M7Z0 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
RNFT1Q5M7Z0 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
RNFT1Q5M7Z0 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
RNFT1Q5M7Z0 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC18.83■□□□□ 0.6
RNFT1Q5M7Z0 AC008687.6-201ENST00000596318 630 ntBASIC18.83■□□□□ 0.6
RNFT1Q5M7Z0 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
RNFT1Q5M7Z0 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC18.83■□□□□ 0.6
RNFT1Q5M7Z0 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
RNFT1Q5M7Z0 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
RNFT1Q5M7Z0 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
RNFT1Q5M7Z0 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC18.83■□□□□ 0.6
RNFT1Q5M7Z0 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
RNFT1Q5M7Z0 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
RNFT1Q5M7Z0 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RNFT1Q5M7Z0 LSM12P1-201ENST00000411836 588 ntBASIC18.82■□□□□ 0.6
RNFT1Q5M7Z0 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC18.82■□□□□ 0.6
RNFT1Q5M7Z0 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC18.82■□□□□ 0.6
RNFT1Q5M7Z0 VMO1-204ENST00000441199 741 ntTSL 2 BASIC18.82■□□□□ 0.6
RNFT1Q5M7Z0 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC18.82■□□□□ 0.6
RNFT1Q5M7Z0 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC18.82■□□□□ 0.6
RNFT1Q5M7Z0 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RNFT1Q5M7Z0 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
RNFT1Q5M7Z0 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RNFT1Q5M7Z0 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC18.81■□□□□ 0.6
RNFT1Q5M7Z0 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC18.81■□□□□ 0.6
RNFT1Q5M7Z0 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RNFT1Q5M7Z0 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
RNFT1Q5M7Z0 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC18.81■□□□□ 0.6
RNFT1Q5M7Z0 CDV3P1-201ENST00000471403 739 ntBASIC18.81■□□□□ 0.6
RNFT1Q5M7Z0 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC18.81■□□□□ 0.6
RNFT1Q5M7Z0 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
RNFT1Q5M7Z0 ITM2C-210ENST00000620962 501 ntBASIC18.81■□□□□ 0.6
RNFT1Q5M7Z0 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RNFT1Q5M7Z0 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC18.81■□□□□ 0.6
RNFT1Q5M7Z0 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RNFT1Q5M7Z0 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
RNFT1Q5M7Z0 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
RNFT1Q5M7Z0 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
RNFT1Q5M7Z0 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RNFT1Q5M7Z0 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC18.8■□□□□ 0.6
RNFT1Q5M7Z0 PRORSD1P-201ENST00000295112 541 ntBASIC18.8■□□□□ 0.6
RNFT1Q5M7Z0 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
RNFT1Q5M7Z0 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
RNFT1Q5M7Z0 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC18.8■□□□□ 0.6
RNFT1Q5M7Z0 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC18.8■□□□□ 0.6
RNFT1Q5M7Z0 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
RNFT1Q5M7Z0 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC18.8■□□□□ 0.6
RNFT1Q5M7Z0 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC18.8■□□□□ 0.6
RNFT1Q5M7Z0 CYP2T3P-201ENST00000601990 817 ntBASIC18.8■□□□□ 0.6
RNFT1Q5M7Z0 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC18.8■□□□□ 0.6
RNFT1Q5M7Z0 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
RNFT1Q5M7Z0 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
RNFT1Q5M7Z0 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
RNFT1Q5M7Z0 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC18.8■□□□□ 0.6
RNFT1Q5M7Z0 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
RNFT1Q5M7Z0 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC18.8■□□□□ 0.6
RNFT1Q5M7Z0 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RNFT1Q5M7Z0 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RNFT1Q5M7Z0 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RNFT1Q5M7Z0 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
RNFT1Q5M7Z0 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC18.79■□□□□ 0.6
RNFT1Q5M7Z0 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RNFT1Q5M7Z0 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
RNFT1Q5M7Z0 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RNFT1Q5M7Z0 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC18.79■□□□□ 0.6
RNFT1Q5M7Z0 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC18.79■□□□□ 0.6
RNFT1Q5M7Z0 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC18.79■□□□□ 0.6
RNFT1Q5M7Z0 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC18.79■□□□□ 0.6
RNFT1Q5M7Z0 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC18.79■□□□□ 0.6
RNFT1Q5M7Z0 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
RNFT1Q5M7Z0 AC100791.3-201ENST00000617619 330 ntBASIC18.79■□□□□ 0.6
RNFT1Q5M7Z0 INO80E-214ENST00000620599 515 ntTSL 2 BASIC18.79■□□□□ 0.6
RNFT1Q5M7Z0 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
RNFT1Q5M7Z0 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
RNFT1Q5M7Z0 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RNFT1Q5M7Z0 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC18.79■□□□□ 0.6
RNFT1Q5M7Z0 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC18.79■□□□□ 0.6
RNFT1Q5M7Z0 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
RNFT1Q5M7Z0 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
RNFT1Q5M7Z0 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 13.6 ms