Protein–RNA interactions for Protein: P40968

CDC40, Pre-mRNA-processing factor 17, yeastyeast

Predicted RBP Predictions only

Length 455 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CDC40P40968 YDR209CYDR209C 414 nt2.42□□□□□ -2.02
CDC40P40968 YGL041W-AYGL041W-A 465 nt2.42□□□□□ -2.02
CDC40P40968 CTK2YJL006C 972 nt2.42□□□□□ -2.02
CDC40P40968 RPL22AYLR061W 366 nt2.42□□□□□ -2.02
CDC40P40968 NYV1YLR093C 762 nt2.42□□□□□ -2.02
CDC40P40968 SHG1YBR258C 429 nt2.42□□□□□ -2.02
CDC40P40968 PFF1YBR074W 2931 nt2.42□□□□□ -2.02
CDC40P40968 NMD2YHR077C 3270 nt2.42□□□□□ -2.02
CDC40P40968 MAL33YBR297W 1407 nt2.42□□□□□ -2.02
CDC40P40968 AKR1YDR264C 2295 nt2.42□□□□□ -2.02
CDC40P40968 YTA7YGR270W 4140 nt2.41□□□□□ -2.02
CDC40P40968 NEL1YHR035W 1893 nt2.41□□□□□ -2.02
CDC40P40968 TOP2YNL088W 4287 nt2.41□□□□□ -2.02
CDC40P40968 SMY2YBR172C 2223 nt2.41□□□□□ -2.02
CDC40P40968 SPT14YPL175W 1359 nt2.41□□□□□ -2.02
CDC40P40968 tK(UUU)DtK(UUU)D 73 nt2.41□□□□□ -2.02
CDC40P40968 tK(UUU)G1tK(UUU)G1 73 nt2.41□□□□□ -2.02
CDC40P40968 tK(UUU)G2tK(UUU)G2 73 nt2.41□□□□□ -2.02
CDC40P40968 tK(UUU)KtK(UUU)K 73 nt2.41□□□□□ -2.02
CDC40P40968 tK(UUU)LtK(UUU)L 73 nt2.41□□□□□ -2.02
CDC40P40968 tK(UUU)OtK(UUU)O 73 nt2.41□□□□□ -2.02
CDC40P40968 tK(UUU)PtK(UUU)P 73 nt2.41□□□□□ -2.02
CDC40P40968 OST5YGL226C-A 261 nt2.41□□□□□ -2.02
CDC40P40968 GPX1YKL026C 504 nt2.41□□□□□ -2.02
CDC40P40968 SDH3YKL141W 597 nt2.41□□□□□ -2.02
CDC40P40968 MRPL16YBL038W 699 nt2.41□□□□□ -2.02
CDC40P40968 CSI2YOL007C 1026 nt2.41□□□□□ -2.02
CDC40P40968 COQ10YOL008W 624 nt2.41□□□□□ -2.02
CDC40P40968 YOL038C-AYOL038C-A 96 nt2.41□□□□□ -2.02
CDC40P40968 YOL162WYOL162W 648 nt2.41□□□□□ -2.02
CDC40P40968 ACM1YPL267W 630 nt2.41□□□□□ -2.02
CDC40P40968 SRP1YNL189W 1629 nt2.41□□□□□ -2.02
CDC40P40968 YEL1YBL060W 2064 nt2.41□□□□□ -2.02
CDC40P40968 FUS1YCL027W 1539 nt2.41□□□□□ -2.02
CDC40P40968 NTO1YPR031W 2247 nt2.41□□□□□ -2.02
CDC40P40968 SEC7YDR170C 6030 nt2.41□□□□□ -2.02
CDC40P40968 SLF1YDR515W 1344 nt2.41□□□□□ -2.02
CDC40P40968 SWR1YDR334W 4545 nt2.4□□□□□ -2.03
CDC40P40968 MRPL32YCR003W 552 nt2.4□□□□□ -2.03
CDC40P40968 ATC1YDR184C 885 nt2.4□□□□□ -2.03
CDC40P40968 RRT13YER066W 558 nt2.4□□□□□ -2.03
CDC40P40968 YKL115CYKL115C 393 nt2.4□□□□□ -2.03
CDC40P40968 GPN3YLR243W 819 nt2.4□□□□□ -2.03
CDC40P40968 FPR1YNL135C 345 nt2.4□□□□□ -2.03
CDC40P40968 snR191snR191 274 nt2.4□□□□□ -2.03
CDC40P40968 YDR239CYDR239C 2364 nt2.4□□□□□ -2.03
CDC40P40968 AMS1YGL156W 3252 nt2.4□□□□□ -2.03
CDC40P40968 GCD10YNL062C 1437 nt2.4□□□□□ -2.03
CDC40P40968 YGL176CYGL176C 1665 nt2.4□□□□□ -2.03
CDC40P40968 SLS1YLR139C 1932 nt2.4□□□□□ -2.03
CDC40P40968 YLR108CYLR108C 1458 nt2.39□□□□□ -2.03
CDC40P40968 RTG3YBL103C 1461 nt2.39□□□□□ -2.03
CDC40P40968 ARP5YNL059C 2268 nt2.39□□□□□ -2.03
CDC40P40968 SWA2YDR320C 2007 nt2.39□□□□□ -2.03
CDC40P40968 BRE5YNR051C 1548 nt2.39□□□□□ -2.03
CDC40P40968 NOP19YGR251W 591 nt2.39□□□□□ -2.03
CDC40P40968 RPL27AYHR010W 411 nt2.39□□□□□ -2.03
CDC40P40968 CMC1YKL137W 336 nt2.39□□□□□ -2.03
CDC40P40968 YLR257WYLR257W 966 nt2.39□□□□□ -2.03
CDC40P40968 IRC21YMR073C 606 nt2.39□□□□□ -2.03
CDC40P40968 ESF2YNR054C 951 nt2.39□□□□□ -2.03
CDC40P40968 YAP7YOL028C 738 nt2.39□□□□□ -2.03
CDC40P40968 PET20YPL159C 762 nt2.39□□□□□ -2.03
CDC40P40968 RFC5YBR087W 1065 nt2.39□□□□□ -2.03
CDC40P40968 YBR116CYBR116C 528 nt2.39□□□□□ -2.03
CDC40P40968 NGG1YDR176W 2109 nt2.39□□□□□ -2.03
CDC40P40968 YGR067CYGR067C 2415 nt2.39□□□□□ -2.03
CDC40P40968 ORC2YBR060C 1863 nt2.39□□□□□ -2.03
CDC40P40968 YDR034C-CYDR034C-C 1317 nt2.39□□□□□ -2.03
CDC40P40968 YLR410W-AYLR410W-A 1317 nt2.39□□□□□ -2.03
CDC40P40968 PSK2YOL045W 3306 nt2.39□□□□□ -2.03
CDC40P40968 RIM1YCR028C-A 408 nt2.38□□□□□ -2.03
CDC40P40968 RPS14AYCR031C 414 nt2.38□□□□□ -2.03
CDC40P40968 ERG28YER044C 447 nt2.38□□□□□ -2.03
CDC40P40968 tQ(UUG)BtQ(UUG)B 72 nt2.38□□□□□ -2.03
CDC40P40968 YIR021W-AYIR021W-A 213 nt2.38□□□□□ -2.03
CDC40P40968 YAL042C-AYAL042C-A 378 nt2.38□□□□□ -2.03
CDC40P40968 MRP49YKL167C 414 nt2.38□□□□□ -2.03
CDC40P40968 RPF2YKR081C 1035 nt2.38□□□□□ -2.03
CDC40P40968 GRE2YOL151W 1029 nt2.38□□□□□ -2.03
CDC40P40968 YOR385WYOR385W 873 nt2.38□□□□□ -2.03
CDC40P40968 LCL1YPL056C 306 nt2.38□□□□□ -2.03
CDC40P40968 EXO5YBR163W 1758 nt2.38□□□□□ -2.03
CDC40P40968 RPS22AYJL190C 393 nt2.37□□□□□ -2.03
CDC40P40968 POL32YJR043C 1053 nt2.37□□□□□ -2.03
CDC40P40968 RPL16BYNL069C 597 nt2.37□□□□□ -2.03
CDC40P40968 SHQ1YIL104C 1524 nt2.37□□□□□ -2.03
CDC40P40968 COG3YER157W 2406 nt2.37□□□□□ -2.03
CDC40P40968 NAB3YPL190C 2409 nt2.37□□□□□ -2.03
CDC40P40968 ALY1YKR021W 2748 nt2.36□□□□□ -2.03
CDC40P40968 YNR063WYNR063W 1824 nt2.36□□□□□ -2.03
CDC40P40968 FLO5YHR211W 3228 nt2.36□□□□□ -2.03
CDC40P40968 SNA4YDL123W 423 nt2.36□□□□□ -2.03
CDC40P40968 VAB2YEL005C 849 nt2.36□□□□□ -2.03
CDC40P40968 MPO1YGL010W 525 nt2.36□□□□□ -2.03
CDC40P40968 AIM26YKL037W 357 nt2.36□□□□□ -2.03
CDC40P40968 IMP4YNL075W 873 nt2.36□□□□□ -2.03
CDC40P40968 RRT16YNL105W 429 nt2.36□□□□□ -2.03
CDC40P40968 ATX1YNL259C 222 nt2.36□□□□□ -2.03
CDC40P40968 YOR073W-AYOR073W-A 234 nt2.36□□□□□ -2.03
Retrieved 100 of 7,029 protein–RNA pairs in 38.5 ms