Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
USF1P22415 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC17.63■□□□□ 0.41
USF1P22415 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC17.63■□□□□ 0.41
USF1P22415 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
USF1P22415 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
USF1P22415 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC17.63■□□□□ 0.41
USF1P22415 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC17.63■□□□□ 0.41
USF1P22415 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
USF1P22415 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
USF1P22415 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
USF1P22415 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
USF1P22415 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC17.62■□□□□ 0.41
USF1P22415 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
USF1P22415 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
USF1P22415 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
USF1P22415 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
USF1P22415 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC17.62■□□□□ 0.41
USF1P22415 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC17.62■□□□□ 0.41
USF1P22415 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
USF1P22415 POU5F1P3-201ENST00000428824 1078 ntBASIC17.62■□□□□ 0.41
USF1P22415 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC17.62■□□□□ 0.41
USF1P22415 RNF146-206ENST00000480444 843 ntTSL 2 BASIC17.62■□□□□ 0.41
USF1P22415 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC17.62■□□□□ 0.41
USF1P22415 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC17.62■□□□□ 0.41
USF1P22415 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC17.62■□□□□ 0.41
USF1P22415 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
USF1P22415 AC016405.3-201ENST00000607710 860 ntBASIC17.62■□□□□ 0.41
USF1P22415 MARS-234ENST00000630571 216 ntTSL 5 BASIC17.62■□□□□ 0.41
USF1P22415 MARS-235ENST00000630803 183 ntTSL 3 BASIC17.62■□□□□ 0.41
USF1P22415 LINC00565-201ENST00000562710 2331 ntBASIC17.62■□□□□ 0.41
USF1P22415 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC17.62■□□□□ 0.41
USF1P22415 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
USF1P22415 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
USF1P22415 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
USF1P22415 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
USF1P22415 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
USF1P22415 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
USF1P22415 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
USF1P22415 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
USF1P22415 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
USF1P22415 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
USF1P22415 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
USF1P22415 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC17.61■□□□□ 0.41
USF1P22415 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
USF1P22415 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
USF1P22415 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
USF1P22415 AC139530.1-201ENST00000575312 1977 ntBASIC17.61■□□□□ 0.41
USF1P22415 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
USF1P22415 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC17.61■□□□□ 0.41
USF1P22415 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC17.61■□□□□ 0.41
USF1P22415 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC17.61■□□□□ 0.41
USF1P22415 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC17.61■□□□□ 0.41
USF1P22415 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC17.61■□□□□ 0.41
USF1P22415 AC092118.2-201ENST00000613495 667 ntBASIC17.61■□□□□ 0.41
USF1P22415 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC17.61■□□□□ 0.41
USF1P22415 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
USF1P22415 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
USF1P22415 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
USF1P22415 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
USF1P22415 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
USF1P22415 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
USF1P22415 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
USF1P22415 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC17.6■□□□□ 0.41
USF1P22415 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
USF1P22415 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
USF1P22415 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
USF1P22415 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
USF1P22415 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC17.6■□□□□ 0.41
USF1P22415 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
USF1P22415 KRT18P29-201ENST00000397031 1267 ntBASIC17.6■□□□□ 0.41
USF1P22415 AC093787.1-201ENST00000450396 207 ntBASIC17.6■□□□□ 0.41
USF1P22415 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC17.6■□□□□ 0.41
USF1P22415 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC17.6■□□□□ 0.41
USF1P22415 PLLP-204ENST00000569059 665 ntTSL 3 BASIC17.6■□□□□ 0.41
USF1P22415 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC17.6■□□□□ 0.41
USF1P22415 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC17.6■□□□□ 0.41
USF1P22415 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
USF1P22415 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC17.6■□□□□ 0.41
USF1P22415 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
USF1P22415 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
USF1P22415 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
USF1P22415 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
USF1P22415 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
USF1P22415 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
USF1P22415 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC17.59■□□□□ 0.41
USF1P22415 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC17.59■□□□□ 0.41
USF1P22415 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
USF1P22415 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
USF1P22415 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
USF1P22415 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
USF1P22415 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
USF1P22415 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
USF1P22415 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
USF1P22415 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
USF1P22415 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
USF1P22415 BX276092.2-201ENST00000417668 665 ntBASIC17.59■□□□□ 0.41
USF1P22415 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC17.59■□□□□ 0.41
USF1P22415 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
USF1P22415 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC17.59■□□□□ 0.41
USF1P22415 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms