Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
XRCC1P18887 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
XRCC1P18887 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
XRCC1P18887 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC20.74■□□□□ 0.91
XRCC1P18887 SERP1-208ENST00000491660 830 ntTSL 2 BASIC20.74■□□□□ 0.91
XRCC1P18887 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC20.74■□□□□ 0.91
XRCC1P18887 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC20.74■□□□□ 0.91
XRCC1P18887 AP001160.3-201ENST00000601484 763 ntBASIC20.74■□□□□ 0.91
XRCC1P18887 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
XRCC1P18887 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
XRCC1P18887 Z98882.1-201ENST00000622160 2253 ntBASIC20.74■□□□□ 0.91
XRCC1P18887 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
XRCC1P18887 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
XRCC1P18887 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
XRCC1P18887 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
XRCC1P18887 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.73■□□□□ 0.91
XRCC1P18887 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.73■□□□□ 0.91
XRCC1P18887 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
XRCC1P18887 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.73■□□□□ 0.91
XRCC1P18887 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
XRCC1P18887 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
XRCC1P18887 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
XRCC1P18887 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
XRCC1P18887 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
XRCC1P18887 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC20.73■□□□□ 0.91
XRCC1P18887 EEF1DP3-203ENST00000566025 782 ntBASIC20.73■□□□□ 0.91
XRCC1P18887 AC138907.5-202ENST00000569484 235 ntBASIC20.73■□□□□ 0.91
XRCC1P18887 AC080038.1-201ENST00000611274 1154 ntBASIC20.73■□□□□ 0.91
XRCC1P18887 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
XRCC1P18887 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
XRCC1P18887 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
XRCC1P18887 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
XRCC1P18887 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
XRCC1P18887 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
XRCC1P18887 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
XRCC1P18887 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
XRCC1P18887 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
XRCC1P18887 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
XRCC1P18887 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
XRCC1P18887 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC20.72■□□□□ 0.91
XRCC1P18887 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC20.72■□□□□ 0.91
XRCC1P18887 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
XRCC1P18887 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
XRCC1P18887 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC20.72■□□□□ 0.91
XRCC1P18887 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
XRCC1P18887 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
XRCC1P18887 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
XRCC1P18887 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
XRCC1P18887 SPI1-203ENST00000533030 661 ntTSL 2 BASIC20.72■□□□□ 0.91
XRCC1P18887 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC20.72■□□□□ 0.91
XRCC1P18887 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC20.72■□□□□ 0.91
XRCC1P18887 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC20.72■□□□□ 0.91
XRCC1P18887 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
XRCC1P18887 AC053503.5-201ENST00000601508 636 ntBASIC20.72■□□□□ 0.91
XRCC1P18887 BID-214ENST00000617586 542 ntTSL 5 BASIC20.72■□□□□ 0.91
XRCC1P18887 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC20.72■□□□□ 0.91
XRCC1P18887 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
XRCC1P18887 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
XRCC1P18887 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
XRCC1P18887 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
XRCC1P18887 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
XRCC1P18887 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
XRCC1P18887 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
XRCC1P18887 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.71■□□□□ 0.91
XRCC1P18887 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
XRCC1P18887 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
XRCC1P18887 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
XRCC1P18887 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
XRCC1P18887 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC20.71■□□□□ 0.91
XRCC1P18887 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC20.71■□□□□ 0.91
XRCC1P18887 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC20.71■□□□□ 0.91
XRCC1P18887 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC20.71■□□□□ 0.91
XRCC1P18887 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC20.71■□□□□ 0.91
XRCC1P18887 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
XRCC1P18887 FEM1AP4-201ENST00000443167 1987 ntBASIC20.71■□□□□ 0.91
XRCC1P18887 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC20.71■□□□□ 0.91
XRCC1P18887 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
XRCC1P18887 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC20.71■□□□□ 0.91
XRCC1P18887 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
XRCC1P18887 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
XRCC1P18887 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
XRCC1P18887 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
XRCC1P18887 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC20.7■□□□□ 0.9
XRCC1P18887 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
XRCC1P18887 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
XRCC1P18887 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC20.7■□□□□ 0.9
XRCC1P18887 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC20.7■□□□□ 0.9
XRCC1P18887 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC20.7■□□□□ 0.9
XRCC1P18887 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
XRCC1P18887 KRT18P20-201ENST00000548986 1279 ntBASIC20.7■□□□□ 0.9
XRCC1P18887 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC20.7■□□□□ 0.9
XRCC1P18887 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.7■□□□□ 0.9
XRCC1P18887 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
XRCC1P18887 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC20.7■□□□□ 0.9
XRCC1P18887 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.7■□□□□ 0.9
XRCC1P18887 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
XRCC1P18887 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC20.7■□□□□ 0.9
XRCC1P18887 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
XRCC1P18887 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
XRCC1P18887 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms