Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
APOEP02649 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
APOEP02649 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC21.82■■□□□ 1.08
APOEP02649 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC21.82■■□□□ 1.08
APOEP02649 SLC7A5P2-201ENST00000553010 536 ntBASIC21.82■■□□□ 1.08
APOEP02649 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC21.82■■□□□ 1.08
APOEP02649 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC21.82■■□□□ 1.08
APOEP02649 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC21.82■■□□□ 1.08
APOEP02649 TFG-210ENST00000620299 1289 ntTSL 5 BASIC21.82■■□□□ 1.08
APOEP02649 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
APOEP02649 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
APOEP02649 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
APOEP02649 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
APOEP02649 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
APOEP02649 NARF-205ENST00000412079 1760 ntTSL 5 BASIC21.82■■□□□ 1.08
APOEP02649 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
APOEP02649 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
APOEP02649 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC21.81■■□□□ 1.08
APOEP02649 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
APOEP02649 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
APOEP02649 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC21.81■■□□□ 1.08
APOEP02649 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC21.81■■□□□ 1.08
APOEP02649 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC21.81■■□□□ 1.08
APOEP02649 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
APOEP02649 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC21.81■■□□□ 1.08
APOEP02649 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC21.81■■□□□ 1.08
APOEP02649 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
APOEP02649 AC061975.6-201ENST00000579045 1553 ntBASIC21.81■■□□□ 1.08
APOEP02649 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
APOEP02649 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
APOEP02649 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
APOEP02649 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
APOEP02649 KRT16P2-201ENST00000414673 1423 ntBASIC21.8■■□□□ 1.08
APOEP02649 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
APOEP02649 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
APOEP02649 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
APOEP02649 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
APOEP02649 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC21.8■■□□□ 1.08
APOEP02649 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
APOEP02649 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
APOEP02649 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC21.8■■□□□ 1.08
APOEP02649 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
APOEP02649 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
APOEP02649 DLX3-202ENST00000512495 834 ntTSL 2 BASIC21.8■■□□□ 1.08
APOEP02649 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
APOEP02649 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC21.8■■□□□ 1.08
APOEP02649 AC011767.1-201ENST00000617410 1153 ntBASIC21.8■■□□□ 1.08
APOEP02649 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC21.8■■□□□ 1.08
APOEP02649 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
APOEP02649 MFF-203ENST00000349901 1716 ntTSL 2 BASIC21.8■■□□□ 1.08
APOEP02649 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC21.8■■□□□ 1.08
APOEP02649 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
APOEP02649 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC21.8■■□□□ 1.08
APOEP02649 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
APOEP02649 PALM-208ENST00000592155 2272 ntTSL 4 BASIC21.8■■□□□ 1.08
APOEP02649 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC21.79■■□□□ 1.08
APOEP02649 STX5-203ENST00000394690 1568 ntTSL 5 BASIC21.79■■□□□ 1.08
APOEP02649 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
APOEP02649 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC21.79■■□□□ 1.08
APOEP02649 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
APOEP02649 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC21.79■■□□□ 1.08
APOEP02649 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
APOEP02649 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
APOEP02649 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC21.79■■□□□ 1.08
APOEP02649 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC21.79■■□□□ 1.08
APOEP02649 BRI3-207ENST00000539286 699 ntTSL 2 BASIC21.79■■□□□ 1.08
APOEP02649 SLC7A5P1-201ENST00000568957 537 ntBASIC21.79■■□□□ 1.08
APOEP02649 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
APOEP02649 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
APOEP02649 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
APOEP02649 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
APOEP02649 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
APOEP02649 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
APOEP02649 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
APOEP02649 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC21.78■■□□□ 1.08
APOEP02649 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC21.78■■□□□ 1.08
APOEP02649 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
APOEP02649 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
APOEP02649 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC21.78■■□□□ 1.08
APOEP02649 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
APOEP02649 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
APOEP02649 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
APOEP02649 VPS53-216ENST00000574029 585 ntTSL 4 BASIC21.78■■□□□ 1.08
APOEP02649 MFSD11-216ENST00000590393 1141 ntBASIC21.78■■□□□ 1.08
APOEP02649 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC21.78■■□□□ 1.08
APOEP02649 AC080038.1-201ENST00000611274 1154 ntBASIC21.78■■□□□ 1.08
APOEP02649 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
APOEP02649 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
APOEP02649 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
APOEP02649 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC21.78■■□□□ 1.08
APOEP02649 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
APOEP02649 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
APOEP02649 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
APOEP02649 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
APOEP02649 TUB-203ENST00000534099 1759 ntTSL 2 BASIC21.77■■□□□ 1.08
APOEP02649 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
APOEP02649 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
APOEP02649 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
APOEP02649 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
APOEP02649 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms