Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
NPHP4O75161 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
NPHP4O75161 AC245052.3-201ENST00000450182 901 ntBASIC29.8■■■□□ 2.36
NPHP4O75161 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
NPHP4O75161 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC29.8■■■□□ 2.36
NPHP4O75161 RARRES2P10-201ENST00000564312 460 ntBASIC29.8■■■□□ 2.36
NPHP4O75161 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC29.8■■■□□ 2.36
NPHP4O75161 AC092068.2-201ENST00000590491 1708 ntBASIC29.8■■■□□ 2.36
NPHP4O75161 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC29.8■■■□□ 2.36
NPHP4O75161 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC29.8■■■□□ 2.36
NPHP4O75161 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC29.8■■■□□ 2.36
NPHP4O75161 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC29.79■■■□□ 2.36
NPHP4O75161 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC29.79■■■□□ 2.36
NPHP4O75161 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC29.79■■■□□ 2.36
NPHP4O75161 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
NPHP4O75161 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
NPHP4O75161 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC29.79■■■□□ 2.36
NPHP4O75161 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC29.79■■■□□ 2.36
NPHP4O75161 PRKY-204ENST00000533551 1019 ntBASIC29.79■■■□□ 2.36
NPHP4O75161 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC29.79■■■□□ 2.36
NPHP4O75161 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC29.79■■■□□ 2.36
NPHP4O75161 AC110285.5-201ENST00000611501 352 ntBASIC29.79■■■□□ 2.36
NPHP4O75161 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC29.79■■■□□ 2.36
NPHP4O75161 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC29.79■■■□□ 2.36
NPHP4O75161 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC29.79■■■□□ 2.36
NPHP4O75161 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
NPHP4O75161 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC29.79■■■□□ 2.36
NPHP4O75161 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC29.79■■■□□ 2.36
NPHP4O75161 NXN-202ENST00000537628 1340 ntTSL 3 BASIC29.79■■■□□ 2.36
NPHP4O75161 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC29.79■■■□□ 2.36
NPHP4O75161 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC29.78■■■□□ 2.36
NPHP4O75161 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC29.78■■■□□ 2.36
NPHP4O75161 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC29.78■■■□□ 2.36
NPHP4O75161 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC29.78■■■□□ 2.36
NPHP4O75161 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC29.78■■■□□ 2.36
NPHP4O75161 AC105020.6-201ENST00000621523 1217 ntBASIC29.78■■■□□ 2.36
NPHP4O75161 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
NPHP4O75161 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC29.78■■■□□ 2.36
NPHP4O75161 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC29.77■■■□□ 2.36
NPHP4O75161 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC29.77■■■□□ 2.36
NPHP4O75161 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC29.77■■■□□ 2.36
NPHP4O75161 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
NPHP4O75161 SAPCD2P1-201ENST00000395413 1184 ntBASIC29.77■■■□□ 2.36
NPHP4O75161 KRASP1-201ENST00000407852 552 ntBASIC29.77■■■□□ 2.36
NPHP4O75161 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
NPHP4O75161 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC29.77■■■□□ 2.36
NPHP4O75161 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC29.77■■■□□ 2.36
NPHP4O75161 ANOS2P-203ENST00000472227 1816 ntBASIC29.77■■■□□ 2.36
NPHP4O75161 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC29.77■■■□□ 2.36
NPHP4O75161 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC29.77■■■□□ 2.36
NPHP4O75161 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
NPHP4O75161 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.36
NPHP4O75161 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC29.76■■■□□ 2.36
NPHP4O75161 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC29.76■■■□□ 2.36
NPHP4O75161 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC29.76■■■□□ 2.36
NPHP4O75161 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC29.76■■■□□ 2.36
NPHP4O75161 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC29.76■■■□□ 2.35
NPHP4O75161 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC29.76■■■□□ 2.35
NPHP4O75161 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC29.76■■■□□ 2.35
NPHP4O75161 AL049597.2-201ENST00000565575 961 ntBASIC29.76■■■□□ 2.35
NPHP4O75161 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC29.76■■■□□ 2.35
NPHP4O75161 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC29.76■■■□□ 2.35
NPHP4O75161 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC29.75■■■□□ 2.35
NPHP4O75161 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC29.75■■■□□ 2.35
NPHP4O75161 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC29.75■■■□□ 2.35
NPHP4O75161 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC29.75■■■□□ 2.35
NPHP4O75161 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC29.75■■■□□ 2.35
NPHP4O75161 AL590326.2-201ENST00000625139 305 ntBASIC29.75■■■□□ 2.35
NPHP4O75161 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC29.75■■■□□ 2.35
NPHP4O75161 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
NPHP4O75161 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC29.75■■■□□ 2.35
NPHP4O75161 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
NPHP4O75161 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
NPHP4O75161 THEM4-205ENST00000489410 643 ntTSL 2 BASIC29.74■■■□□ 2.35
NPHP4O75161 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC29.74■■■□□ 2.35
NPHP4O75161 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC29.74■■■□□ 2.35
NPHP4O75161 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC29.74■■■□□ 2.35
NPHP4O75161 AC092865.7-201ENST00000641832 219 ntBASIC29.74■■■□□ 2.35
NPHP4O75161 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC29.74■■■□□ 2.35
NPHP4O75161 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
NPHP4O75161 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
NPHP4O75161 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC29.74■■■□□ 2.35
NPHP4O75161 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC29.73■■■□□ 2.35
NPHP4O75161 TPM1-226ENST00000560959 925 ntTSL 2 BASIC29.73■■■□□ 2.35
NPHP4O75161 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC29.73■■■□□ 2.35
NPHP4O75161 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC29.73■■■□□ 2.35
NPHP4O75161 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
NPHP4O75161 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
NPHP4O75161 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC29.73■■■□□ 2.35
NPHP4O75161 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
NPHP4O75161 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
NPHP4O75161 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC29.73■■■□□ 2.35
NPHP4O75161 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC29.73■■■□□ 2.35
NPHP4O75161 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC29.73■■■□□ 2.35
NPHP4O75161 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC29.72■■■□□ 2.35
NPHP4O75161 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC29.72■■■□□ 2.35
NPHP4O75161 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
NPHP4O75161 RNF146-204ENST00000476956 884 ntTSL 2 BASIC29.72■■■□□ 2.35
NPHP4O75161 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC29.72■■■□□ 2.35
NPHP4O75161 CYP21A1P-202ENST00000354927 1481 ntBASIC29.72■■■□□ 2.35
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms