Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC20.26■□□□□ 0.83
UBFD1O14562 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC20.26■□□□□ 0.83
UBFD1O14562 AF213884.3-201ENST00000563833 479 ntBASIC20.26■□□□□ 0.83
UBFD1O14562 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC20.26■□□□□ 0.83
UBFD1O14562 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
UBFD1O14562 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
UBFD1O14562 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
UBFD1O14562 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
UBFD1O14562 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC20.26■□□□□ 0.83
UBFD1O14562 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
UBFD1O14562 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
UBFD1O14562 RASA4CP-201ENST00000424092 1398 ntBASIC20.25■□□□□ 0.83
UBFD1O14562 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
UBFD1O14562 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
UBFD1O14562 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
UBFD1O14562 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
UBFD1O14562 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC20.25■□□□□ 0.83
UBFD1O14562 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC20.25■□□□□ 0.83
UBFD1O14562 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC20.25■□□□□ 0.83
UBFD1O14562 AL355001.2-201ENST00000620617 1191 ntBASIC20.25■□□□□ 0.83
UBFD1O14562 AL136967.2-201ENST00000623968 743 ntBASIC20.25■□□□□ 0.83
UBFD1O14562 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
UBFD1O14562 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
UBFD1O14562 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
UBFD1O14562 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC20.25■□□□□ 0.83
UBFD1O14562 AC007225.1-201ENST00000566331 1836 ntBASIC20.25■□□□□ 0.83
UBFD1O14562 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.25■□□□□ 0.83
UBFD1O14562 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
UBFD1O14562 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
UBFD1O14562 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
UBFD1O14562 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
UBFD1O14562 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC20.24■□□□□ 0.83
UBFD1O14562 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC20.24■□□□□ 0.83
UBFD1O14562 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC20.24■□□□□ 0.83
UBFD1O14562 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC20.24■□□□□ 0.83
UBFD1O14562 EEF1DP3-203ENST00000566025 782 ntBASIC20.24■□□□□ 0.83
UBFD1O14562 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
UBFD1O14562 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
UBFD1O14562 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
UBFD1O14562 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
UBFD1O14562 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
UBFD1O14562 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
UBFD1O14562 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
UBFD1O14562 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.24■□□□□ 0.83
UBFD1O14562 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC20.24■□□□□ 0.83
UBFD1O14562 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
UBFD1O14562 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
UBFD1O14562 PKD1P6-201ENST00000343738 4769 ntBASIC20.23■□□□□ 0.83
UBFD1O14562 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
UBFD1O14562 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
UBFD1O14562 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
UBFD1O14562 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC20.23■□□□□ 0.83
UBFD1O14562 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC20.23■□□□□ 0.83
UBFD1O14562 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC20.23■□□□□ 0.83
UBFD1O14562 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
UBFD1O14562 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC20.23■□□□□ 0.83
UBFD1O14562 AL391422.3-201ENST00000603791 2761 ntBASIC20.23■□□□□ 0.83
UBFD1O14562 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
UBFD1O14562 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
UBFD1O14562 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
UBFD1O14562 AC061975.6-201ENST00000579045 1553 ntBASIC20.22■□□□□ 0.83
UBFD1O14562 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC20.22■□□□□ 0.83
UBFD1O14562 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC20.22■□□□□ 0.83
UBFD1O14562 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
UBFD1O14562 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
UBFD1O14562 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC20.22■□□□□ 0.83
UBFD1O14562 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC20.22■□□□□ 0.83
UBFD1O14562 AC012414.1-201ENST00000556676 535 ntBASIC20.22■□□□□ 0.83
UBFD1O14562 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC20.22■□□□□ 0.83
UBFD1O14562 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
UBFD1O14562 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC20.22■□□□□ 0.83
UBFD1O14562 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC20.21■□□□□ 0.83
UBFD1O14562 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
UBFD1O14562 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
UBFD1O14562 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC20.21■□□□□ 0.83
UBFD1O14562 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
UBFD1O14562 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
UBFD1O14562 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC20.21■□□□□ 0.83
UBFD1O14562 AC091305.1-201ENST00000479476 895 ntBASIC20.21■□□□□ 0.83
UBFD1O14562 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC20.21■□□□□ 0.83
UBFD1O14562 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC20.21■□□□□ 0.83
UBFD1O14562 AC053503.5-201ENST00000601508 636 ntBASIC20.21■□□□□ 0.83
UBFD1O14562 EXOC3-AS1-202ENST00000623673 1663 ntBASIC20.21■□□□□ 0.83
UBFD1O14562 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
UBFD1O14562 BID-203ENST00000399765 1879 ntTSL 2 BASIC20.21■□□□□ 0.83
UBFD1O14562 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
UBFD1O14562 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
UBFD1O14562 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
UBFD1O14562 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC20.21■□□□□ 0.83
UBFD1O14562 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC20.21■□□□□ 0.83
UBFD1O14562 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
UBFD1O14562 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC20.2■□□□□ 0.83
UBFD1O14562 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
UBFD1O14562 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20.2■□□□□ 0.82
UBFD1O14562 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC20.2■□□□□ 0.82
UBFD1O14562 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
UBFD1O14562 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.2■□□□□ 0.82
UBFD1O14562 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
UBFD1O14562 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
UBFD1O14562 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms