Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
TRAV1-1A0A0B4J248 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV1-1A0A0B4J248 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV1-1A0A0B4J248 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
TRAV1-1A0A0B4J248 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV1-1A0A0B4J248 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
TRAV1-1A0A0B4J248 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV1-1A0A0B4J248 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC16.31■□□□□ 0.2
TRAV1-1A0A0B4J248 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC16.31■□□□□ 0.2
TRAV1-1A0A0B4J248 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC16.31■□□□□ 0.2
TRAV1-1A0A0B4J248 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV1-1A0A0B4J248 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV1-1A0A0B4J248 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
TRAV1-1A0A0B4J248 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV1-1A0A0B4J248 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV1-1A0A0B4J248 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC16.31■□□□□ 0.2
TRAV1-1A0A0B4J248 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV1-1A0A0B4J248 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV1-1A0A0B4J248 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV1-1A0A0B4J248 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV1-1A0A0B4J248 AC009102.2-201ENST00000606772 1639 ntBASIC16.3■□□□□ 0.2
TRAV1-1A0A0B4J248 VGF-203ENST00000611537 1622 ntTSL 5 BASIC16.3■□□□□ 0.2
TRAV1-1A0A0B4J248 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV1-1A0A0B4J248 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV1-1A0A0B4J248 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC16.3■□□□□ 0.2
TRAV1-1A0A0B4J248 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV1-1A0A0B4J248 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC16.3■□□□□ 0.2
TRAV1-1A0A0B4J248 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV1-1A0A0B4J248 RNF126P1-201ENST00000567452 1320 ntBASIC16.3■□□□□ 0.2
TRAV1-1A0A0B4J248 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV1-1A0A0B4J248 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV1-1A0A0B4J248 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC16.3■□□□□ 0.2
TRAV1-1A0A0B4J248 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV1-1A0A0B4J248 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV1-1A0A0B4J248 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV1-1A0A0B4J248 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV1-1A0A0B4J248 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
TRAV1-1A0A0B4J248 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC16.3■□□□□ 0.2
TRAV1-1A0A0B4J248 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
TRAV1-1A0A0B4J248 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC16.29■□□□□ 0.2
TRAV1-1A0A0B4J248 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC16.29■□□□□ 0.2
TRAV1-1A0A0B4J248 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRAV1-1A0A0B4J248 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRAV1-1A0A0B4J248 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRAV1-1A0A0B4J248 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC16.29■□□□□ 0.2
TRAV1-1A0A0B4J248 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC16.29■□□□□ 0.2
TRAV1-1A0A0B4J248 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRAV1-1A0A0B4J248 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRAV1-1A0A0B4J248 AC004408.2-201ENST00000623613 2777 ntBASIC16.29■□□□□ 0.2
TRAV1-1A0A0B4J248 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRAV1-1A0A0B4J248 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRAV1-1A0A0B4J248 AC139795.1-202ENST00000500444 432 ntBASIC16.29■□□□□ 0.2
TRAV1-1A0A0B4J248 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRAV1-1A0A0B4J248 MIR7108-201ENST00000614319 87 ntBASIC16.29■□□□□ 0.2
TRAV1-1A0A0B4J248 AC068587.7-201ENST00000641602 218 ntBASIC16.29■□□□□ 0.2
TRAV1-1A0A0B4J248 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC16.29■□□□□ 0.2
TRAV1-1A0A0B4J248 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRAV1-1A0A0B4J248 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRAV1-1A0A0B4J248 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRAV1-1A0A0B4J248 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC16.29■□□□□ 0.2
TRAV1-1A0A0B4J248 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRAV1-1A0A0B4J248 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
TRAV1-1A0A0B4J248 NARF-205ENST00000412079 1760 ntTSL 5 BASIC16.28■□□□□ 0.2
TRAV1-1A0A0B4J248 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV1-1A0A0B4J248 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV1-1A0A0B4J248 AP004607.7-201ENST00000527152 1677 ntBASIC16.28■□□□□ 0.2
TRAV1-1A0A0B4J248 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC16.28■□□□□ 0.2
TRAV1-1A0A0B4J248 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV1-1A0A0B4J248 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV1-1A0A0B4J248 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV1-1A0A0B4J248 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV1-1A0A0B4J248 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV1-1A0A0B4J248 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV1-1A0A0B4J248 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV1-1A0A0B4J248 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV1-1A0A0B4J248 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV1-1A0A0B4J248 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC16.28■□□□□ 0.2
TRAV1-1A0A0B4J248 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV1-1A0A0B4J248 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV1-1A0A0B4J248 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
TRAV1-1A0A0B4J248 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV1-1A0A0B4J248 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV1-1A0A0B4J248 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV1-1A0A0B4J248 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC16.28■□□□□ 0.2
TRAV1-1A0A0B4J248 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV1-1A0A0B4J248 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV1-1A0A0B4J248 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC16.27■□□□□ 0.2
TRAV1-1A0A0B4J248 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRAV1-1A0A0B4J248 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC16.27■□□□□ 0.2
TRAV1-1A0A0B4J248 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
TRAV1-1A0A0B4J248 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRAV1-1A0A0B4J248 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TRAV1-1A0A0B4J248 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRAV1-1A0A0B4J248 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRAV1-1A0A0B4J248 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC16.27■□□□□ 0.2
TRAV1-1A0A0B4J248 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
TRAV1-1A0A0B4J248 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TRAV1-1A0A0B4J248 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC16.27■□□□□ 0.2
TRAV1-1A0A0B4J248 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRAV1-1A0A0B4J248 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms