Protein–RNA interactions for Protein: Q9H0E7

USP44, Ubiquitin carboxyl-terminal hydrolase 44, humanhuman

Predictions only

Length 712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP44Q9H0E7 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC26.25■■□□□ 1.79
USP44Q9H0E7 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC26.25■■□□□ 1.79
USP44Q9H0E7 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC26.25■■□□□ 1.79
USP44Q9H0E7 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC26.25■■□□□ 1.79
USP44Q9H0E7 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC26.25■■□□□ 1.79
USP44Q9H0E7 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC26.25■■□□□ 1.79
USP44Q9H0E7 AC231657.2-201ENST00000624556 255 ntBASIC26.25■■□□□ 1.79
USP44Q9H0E7 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC26.25■■□□□ 1.79
USP44Q9H0E7 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC26.25■■□□□ 1.79
USP44Q9H0E7 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC26.25■■□□□ 1.79
USP44Q9H0E7 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
USP44Q9H0E7 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC26.24■■□□□ 1.79
USP44Q9H0E7 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC26.24■■□□□ 1.79
USP44Q9H0E7 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC26.24■■□□□ 1.79
USP44Q9H0E7 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC26.24■■□□□ 1.79
USP44Q9H0E7 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC26.24■■□□□ 1.79
USP44Q9H0E7 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC26.24■■□□□ 1.79
USP44Q9H0E7 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC26.24■■□□□ 1.79
USP44Q9H0E7 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC26.24■■□□□ 1.79
USP44Q9H0E7 AL050303.2-201ENST00000619798 666 ntBASIC26.24■■□□□ 1.79
USP44Q9H0E7 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC26.24■■□□□ 1.79
USP44Q9H0E7 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
USP44Q9H0E7 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
USP44Q9H0E7 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC26.24■■□□□ 1.79
USP44Q9H0E7 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC26.24■■□□□ 1.79
USP44Q9H0E7 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
USP44Q9H0E7 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC26.23■■□□□ 1.79
USP44Q9H0E7 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC26.23■■□□□ 1.79
USP44Q9H0E7 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC26.23■■□□□ 1.79
USP44Q9H0E7 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC26.23■■□□□ 1.79
USP44Q9H0E7 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
USP44Q9H0E7 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC26.23■■□□□ 1.79
USP44Q9H0E7 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC26.23■■□□□ 1.79
USP44Q9H0E7 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC26.23■■□□□ 1.79
USP44Q9H0E7 AC013268.1-206ENST00000638368 961 ntBASIC26.23■■□□□ 1.79
USP44Q9H0E7 AC112229.1-201ENST00000639295 961 ntBASIC26.23■■□□□ 1.79
USP44Q9H0E7 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC26.23■■□□□ 1.79
USP44Q9H0E7 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC26.23■■□□□ 1.79
USP44Q9H0E7 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
USP44Q9H0E7 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
USP44Q9H0E7 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC26.23■■□□□ 1.79
USP44Q9H0E7 AC068338.2-201ENST00000563278 1430 ntBASIC26.22■■□□□ 1.79
USP44Q9H0E7 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC26.22■■□□□ 1.79
USP44Q9H0E7 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
USP44Q9H0E7 AC007322.1-201ENST00000426983 750 ntBASIC26.22■■□□□ 1.79
USP44Q9H0E7 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
USP44Q9H0E7 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC26.22■■□□□ 1.79
USP44Q9H0E7 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC26.22■■□□□ 1.79
USP44Q9H0E7 AC007322.4-201ENST00000509611 723 ntBASIC26.22■■□□□ 1.79
USP44Q9H0E7 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC26.22■■□□□ 1.79
USP44Q9H0E7 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC26.22■■□□□ 1.79
USP44Q9H0E7 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC26.22■■□□□ 1.79
USP44Q9H0E7 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC26.22■■□□□ 1.79
USP44Q9H0E7 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
USP44Q9H0E7 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
USP44Q9H0E7 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
USP44Q9H0E7 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC26.21■■□□□ 1.79
USP44Q9H0E7 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
USP44Q9H0E7 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC26.21■■□□□ 1.79
USP44Q9H0E7 BMP1-204ENST00000397814 836 ntTSL 4 BASIC26.21■■□□□ 1.79
USP44Q9H0E7 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC26.21■■□□□ 1.79
USP44Q9H0E7 AC091799.1-201ENST00000422823 811 ntBASIC26.21■■□□□ 1.79
USP44Q9H0E7 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
USP44Q9H0E7 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
USP44Q9H0E7 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC26.21■■□□□ 1.79
USP44Q9H0E7 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
USP44Q9H0E7 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC26.21■■□□□ 1.79
USP44Q9H0E7 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
USP44Q9H0E7 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC26.21■■□□□ 1.79
USP44Q9H0E7 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC26.21■■□□□ 1.79
USP44Q9H0E7 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC26.21■■□□□ 1.79
USP44Q9H0E7 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC26.21■■□□□ 1.79
USP44Q9H0E7 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
USP44Q9H0E7 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC26.21■■□□□ 1.79
USP44Q9H0E7 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
USP44Q9H0E7 AC026310.3-201ENST00000625186 2373 ntBASIC26.2■■□□□ 1.79
USP44Q9H0E7 AL024507.2-201ENST00000606070 2574 ntBASIC26.2■■□□□ 1.79
USP44Q9H0E7 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC26.2■■□□□ 1.78
USP44Q9H0E7 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC26.2■■□□□ 1.78
USP44Q9H0E7 APTR-203ENST00000430801 583 ntTSL 5 BASIC26.2■■□□□ 1.78
USP44Q9H0E7 MAP2K4P1-201ENST00000438453 1195 ntBASIC26.2■■□□□ 1.78
USP44Q9H0E7 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC26.2■■□□□ 1.78
USP44Q9H0E7 PPP1R14BP3-201ENST00000509033 445 ntBASIC26.2■■□□□ 1.78
USP44Q9H0E7 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC26.2■■□□□ 1.78
USP44Q9H0E7 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC26.2■■□□□ 1.78
USP44Q9H0E7 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
USP44Q9H0E7 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC26.2■■□□□ 1.78
USP44Q9H0E7 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC26.2■■□□□ 1.78
USP44Q9H0E7 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
USP44Q9H0E7 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC26.19■■□□□ 1.78
USP44Q9H0E7 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
USP44Q9H0E7 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC26.19■■□□□ 1.78
USP44Q9H0E7 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
USP44Q9H0E7 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
USP44Q9H0E7 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
USP44Q9H0E7 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC26.19■■□□□ 1.78
USP44Q9H0E7 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC26.19■■□□□ 1.78
USP44Q9H0E7 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
USP44Q9H0E7 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
USP44Q9H0E7 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC26.19■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms