Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 AP001160.3-201ENST00000601484 763 ntBASIC23.2■■□□□ 1.3
CCDC65Q8IXS2 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC23.2■■□□□ 1.3
CCDC65Q8IXS2 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
CCDC65Q8IXS2 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
CCDC65Q8IXS2 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC23.19■■□□□ 1.3
CCDC65Q8IXS2 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
CCDC65Q8IXS2 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CCDC65Q8IXS2 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CCDC65Q8IXS2 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CCDC65Q8IXS2 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CCDC65Q8IXS2 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC23.19■■□□□ 1.3
CCDC65Q8IXS2 NAA20-201ENST00000310450 920 ntTSL 2 BASIC23.19■■□□□ 1.3
CCDC65Q8IXS2 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC23.19■■□□□ 1.3
CCDC65Q8IXS2 AC034268.1-201ENST00000441047 882 ntBASIC23.19■■□□□ 1.3
CCDC65Q8IXS2 PLD4-205ENST00000553861 667 ntTSL 2 BASIC23.19■■□□□ 1.3
CCDC65Q8IXS2 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC23.19■■□□□ 1.3
CCDC65Q8IXS2 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC23.19■■□□□ 1.3
CCDC65Q8IXS2 AC120498.10-201ENST00000621827 505 ntBASIC23.19■■□□□ 1.3
CCDC65Q8IXS2 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC23.19■■□□□ 1.3
CCDC65Q8IXS2 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC23.19■■□□□ 1.3
CCDC65Q8IXS2 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CCDC65Q8IXS2 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CCDC65Q8IXS2 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC23.19■■□□□ 1.3
CCDC65Q8IXS2 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CCDC65Q8IXS2 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
CCDC65Q8IXS2 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CCDC65Q8IXS2 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CCDC65Q8IXS2 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC23.18■■□□□ 1.3
CCDC65Q8IXS2 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
CCDC65Q8IXS2 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CCDC65Q8IXS2 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC23.18■■□□□ 1.3
CCDC65Q8IXS2 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC23.18■■□□□ 1.3
CCDC65Q8IXS2 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
CCDC65Q8IXS2 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CCDC65Q8IXS2 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC23.18■■□□□ 1.3
CCDC65Q8IXS2 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC23.18■■□□□ 1.3
CCDC65Q8IXS2 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC23.18■■□□□ 1.3
CCDC65Q8IXS2 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC23.18■■□□□ 1.3
CCDC65Q8IXS2 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC23.18■■□□□ 1.3
CCDC65Q8IXS2 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC23.18■■□□□ 1.3
CCDC65Q8IXS2 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CCDC65Q8IXS2 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC23.18■■□□□ 1.3
CCDC65Q8IXS2 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC23.17■■□□□ 1.3
CCDC65Q8IXS2 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CCDC65Q8IXS2 HACD1-201ENST00000326961 773 ntTSL 2 BASIC23.17■■□□□ 1.3
CCDC65Q8IXS2 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CCDC65Q8IXS2 GALNS-213ENST00000569433 723 ntTSL 3 BASIC23.17■■□□□ 1.3
CCDC65Q8IXS2 AC087623.3-201ENST00000607047 1098 ntBASIC23.17■■□□□ 1.3
CCDC65Q8IXS2 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC23.17■■□□□ 1.3
CCDC65Q8IXS2 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CCDC65Q8IXS2 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CCDC65Q8IXS2 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CCDC65Q8IXS2 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC23.16■■□□□ 1.3
CCDC65Q8IXS2 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CCDC65Q8IXS2 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
CCDC65Q8IXS2 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CCDC65Q8IXS2 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC23.16■■□□□ 1.3
CCDC65Q8IXS2 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC23.16■■□□□ 1.3
CCDC65Q8IXS2 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CCDC65Q8IXS2 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CCDC65Q8IXS2 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CCDC65Q8IXS2 KRT16P2-201ENST00000414673 1423 ntBASIC23.16■■□□□ 1.3
CCDC65Q8IXS2 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
CCDC65Q8IXS2 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC23.15■■□□□ 1.3
CCDC65Q8IXS2 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC23.15■■□□□ 1.3
CCDC65Q8IXS2 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC23.15■■□□□ 1.3
CCDC65Q8IXS2 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CCDC65Q8IXS2 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC23.15■■□□□ 1.3
CCDC65Q8IXS2 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC23.15■■□□□ 1.3
CCDC65Q8IXS2 KRT19P1-201ENST00000405746 1186 ntBASIC23.15■■□□□ 1.3
CCDC65Q8IXS2 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
CCDC65Q8IXS2 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC23.15■■□□□ 1.3
CCDC65Q8IXS2 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
CCDC65Q8IXS2 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
CCDC65Q8IXS2 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC23.15■■□□□ 1.3
CCDC65Q8IXS2 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC23.15■■□□□ 1.3
CCDC65Q8IXS2 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC23.15■■□□□ 1.3
CCDC65Q8IXS2 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC23.15■■□□□ 1.3
CCDC65Q8IXS2 USP48-205ENST00000421625 2818 ntTSL 2 BASIC23.15■■□□□ 1.3
CCDC65Q8IXS2 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CCDC65Q8IXS2 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CCDC65Q8IXS2 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CCDC65Q8IXS2 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
CCDC65Q8IXS2 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CCDC65Q8IXS2 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
CCDC65Q8IXS2 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC23.14■■□□□ 1.3
CCDC65Q8IXS2 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
CCDC65Q8IXS2 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.3
CCDC65Q8IXS2 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
CCDC65Q8IXS2 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
CCDC65Q8IXS2 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC23.14■■□□□ 1.29
CCDC65Q8IXS2 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC23.14■■□□□ 1.29
CCDC65Q8IXS2 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
CCDC65Q8IXS2 KRT18P20-201ENST00000548986 1279 ntBASIC23.14■■□□□ 1.29
CCDC65Q8IXS2 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.29
CCDC65Q8IXS2 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
CCDC65Q8IXS2 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC23.13■■□□□ 1.29
CCDC65Q8IXS2 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC23.13■■□□□ 1.29
CCDC65Q8IXS2 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC23.13■■□□□ 1.29
CCDC65Q8IXS2 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms