Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC25.62■■□□□ 1.69
USP48Q86UV5 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC25.62■■□□□ 1.69
USP48Q86UV5 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC25.62■■□□□ 1.69
USP48Q86UV5 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC25.62■■□□□ 1.69
USP48Q86UV5 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC25.62■■□□□ 1.69
USP48Q86UV5 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
USP48Q86UV5 PLLP-204ENST00000569059 665 ntTSL 3 BASIC25.62■■□□□ 1.69
USP48Q86UV5 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC25.62■■□□□ 1.69
USP48Q86UV5 AC006058.3-201ENST00000606217 1069 ntBASIC25.62■■□□□ 1.69
USP48Q86UV5 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC25.62■■□□□ 1.69
USP48Q86UV5 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
USP48Q86UV5 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC25.62■■□□□ 1.69
USP48Q86UV5 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC25.62■■□□□ 1.69
USP48Q86UV5 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC25.61■■□□□ 1.69
USP48Q86UV5 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
USP48Q86UV5 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC25.61■■□□□ 1.69
USP48Q86UV5 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
USP48Q86UV5 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC25.61■■□□□ 1.69
USP48Q86UV5 AC087742.1-201ENST00000575880 1738 ntBASIC25.61■■□□□ 1.69
USP48Q86UV5 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC25.61■■□□□ 1.69
USP48Q86UV5 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
USP48Q86UV5 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
USP48Q86UV5 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC25.61■■□□□ 1.69
USP48Q86UV5 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC25.61■■□□□ 1.69
USP48Q86UV5 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC25.61■■□□□ 1.69
USP48Q86UV5 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC25.61■■□□□ 1.69
USP48Q86UV5 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
USP48Q86UV5 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC25.61■■□□□ 1.69
USP48Q86UV5 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC25.61■■□□□ 1.69
USP48Q86UV5 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC25.6■■□□□ 1.69
USP48Q86UV5 AL512625.2-201ENST00000417533 625 ntBASIC25.6■■□□□ 1.69
USP48Q86UV5 AC008694.1-202ENST00000636953 945 ntBASIC25.6■■□□□ 1.69
USP48Q86UV5 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC25.6■■□□□ 1.69
USP48Q86UV5 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC25.59■■□□□ 1.69
USP48Q86UV5 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
USP48Q86UV5 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
USP48Q86UV5 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
USP48Q86UV5 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
USP48Q86UV5 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC25.59■■□□□ 1.69
USP48Q86UV5 BAALC-201ENST00000297574 801 ntTSL 3 BASIC25.59■■□□□ 1.69
USP48Q86UV5 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC25.59■■□□□ 1.69
USP48Q86UV5 AC128676.1-201ENST00000454392 318 ntBASIC25.59■■□□□ 1.69
USP48Q86UV5 AC097658.1-201ENST00000475555 843 ntBASIC25.59■■□□□ 1.69
USP48Q86UV5 AC007322.4-201ENST00000509611 723 ntBASIC25.59■■□□□ 1.69
USP48Q86UV5 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
USP48Q86UV5 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
USP48Q86UV5 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
USP48Q86UV5 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
USP48Q86UV5 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC25.59■■□□□ 1.69
USP48Q86UV5 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC25.59■■□□□ 1.69
USP48Q86UV5 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
USP48Q86UV5 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
USP48Q86UV5 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
USP48Q86UV5 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC25.58■■□□□ 1.69
USP48Q86UV5 NAA20-201ENST00000310450 920 ntTSL 2 BASIC25.58■■□□□ 1.69
USP48Q86UV5 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC25.58■■□□□ 1.69
USP48Q86UV5 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC25.58■■□□□ 1.69
USP48Q86UV5 MMAB-206ENST00000540016 945 ntTSL 3 BASIC25.58■■□□□ 1.69
USP48Q86UV5 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
USP48Q86UV5 MYC-209ENST00000641252 345 ntBASIC25.58■■□□□ 1.69
USP48Q86UV5 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
USP48Q86UV5 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC25.58■■□□□ 1.69
USP48Q86UV5 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.68
USP48Q86UV5 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
USP48Q86UV5 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC25.57■■□□□ 1.68
USP48Q86UV5 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC25.57■■□□□ 1.68
USP48Q86UV5 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC25.57■■□□□ 1.68
USP48Q86UV5 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC25.57■■□□□ 1.68
USP48Q86UV5 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
USP48Q86UV5 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC25.57■■□□□ 1.68
USP48Q86UV5 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC25.57■■□□□ 1.68
USP48Q86UV5 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC25.57■■□□□ 1.68
USP48Q86UV5 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
USP48Q86UV5 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC25.56■■□□□ 1.68
USP48Q86UV5 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC25.56■■□□□ 1.68
USP48Q86UV5 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC25.56■■□□□ 1.68
USP48Q86UV5 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC25.56■■□□□ 1.68
USP48Q86UV5 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
USP48Q86UV5 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC25.56■■□□□ 1.68
USP48Q86UV5 BET1L-207ENST00000529614 560 ntTSL 5 BASIC25.56■■□□□ 1.68
USP48Q86UV5 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
USP48Q86UV5 AC069236.1-201ENST00000604339 616 ntBASIC25.56■■□□□ 1.68
USP48Q86UV5 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
USP48Q86UV5 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC25.56■■□□□ 1.68
USP48Q86UV5 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC25.56■■□□□ 1.68
USP48Q86UV5 BID-212ENST00000614949 1988 ntTSL 5 BASIC25.56■■□□□ 1.68
USP48Q86UV5 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
USP48Q86UV5 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC25.56■■□□□ 1.68
USP48Q86UV5 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC25.55■■□□□ 1.68
USP48Q86UV5 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
USP48Q86UV5 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
USP48Q86UV5 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
USP48Q86UV5 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC25.55■■□□□ 1.68
USP48Q86UV5 GAS7-202ENST00000396115 929 ntTSL 5 BASIC25.55■■□□□ 1.68
USP48Q86UV5 FXN-202ENST00000396364 980 ntTSL 5 BASIC25.55■■□□□ 1.68
USP48Q86UV5 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC25.55■■□□□ 1.68
USP48Q86UV5 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC25.55■■□□□ 1.68
USP48Q86UV5 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC25.55■■□□□ 1.68
USP48Q86UV5 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC25.55■■□□□ 1.68
USP48Q86UV5 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms