Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC19.38■□□□□ 0.69
RNF4P78317 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RNF4P78317 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
RNF4P78317 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC19.38■□□□□ 0.69
RNF4P78317 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RNF4P78317 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
RNF4P78317 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RNF4P78317 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC19.38■□□□□ 0.69
RNF4P78317 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC19.38■□□□□ 0.69
RNF4P78317 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC19.38■□□□□ 0.69
RNF4P78317 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC19.38■□□□□ 0.69
RNF4P78317 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RNF4P78317 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RNF4P78317 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
RNF4P78317 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
RNF4P78317 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
RNF4P78317 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RNF4P78317 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RNF4P78317 RBM17P2-201ENST00000616397 1405 ntBASIC19.37■□□□□ 0.69
RNF4P78317 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
RNF4P78317 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
RNF4P78317 BMP1-204ENST00000397814 836 ntTSL 4 BASIC19.37■□□□□ 0.69
RNF4P78317 AC007322.1-201ENST00000426983 750 ntBASIC19.37■□□□□ 0.69
RNF4P78317 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC19.37■□□□□ 0.69
RNF4P78317 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC19.37■□□□□ 0.69
RNF4P78317 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
RNF4P78317 AC013268.1-206ENST00000638368 961 ntBASIC19.37■□□□□ 0.69
RNF4P78317 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC19.37■□□□□ 0.69
RNF4P78317 AC112229.1-201ENST00000639295 961 ntBASIC19.37■□□□□ 0.69
RNF4P78317 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC19.37■□□□□ 0.69
RNF4P78317 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
RNF4P78317 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RNF4P78317 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
RNF4P78317 LINC00565-201ENST00000562710 2331 ntBASIC19.36■□□□□ 0.69
RNF4P78317 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC19.36■□□□□ 0.69
RNF4P78317 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC19.36■□□□□ 0.69
RNF4P78317 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC19.36■□□□□ 0.69
RNF4P78317 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
RNF4P78317 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RNF4P78317 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
RNF4P78317 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC19.36■□□□□ 0.69
RNF4P78317 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
RNF4P78317 UQCRFS1P1-201ENST00000435169 820 ntBASIC19.36■□□□□ 0.69
RNF4P78317 CNN2P6-201ENST00000439038 900 ntBASIC19.36■□□□□ 0.69
RNF4P78317 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC19.36■□□□□ 0.69
RNF4P78317 FGF8-207ENST00000618991 856 ntTSL 3 BASIC19.36■□□□□ 0.69
RNF4P78317 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC19.36■□□□□ 0.69
RNF4P78317 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RNF4P78317 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RNF4P78317 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RNF4P78317 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC19.36■□□□□ 0.69
RNF4P78317 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC19.36■□□□□ 0.69
RNF4P78317 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC19.35■□□□□ 0.69
RNF4P78317 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
RNF4P78317 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
RNF4P78317 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RNF4P78317 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC19.35■□□□□ 0.69
RNF4P78317 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC19.35■□□□□ 0.69
RNF4P78317 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RNF4P78317 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
RNF4P78317 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC19.35■□□□□ 0.69
RNF4P78317 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC19.35■□□□□ 0.69
RNF4P78317 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC19.35■□□□□ 0.69
RNF4P78317 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC19.35■□□□□ 0.69
RNF4P78317 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
RNF4P78317 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC19.35■□□□□ 0.69
RNF4P78317 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC19.35■□□□□ 0.69
RNF4P78317 AC243732.1-201ENST00000612648 864 ntBASIC19.35■□□□□ 0.69
RNF4P78317 MAZ-216ENST00000616501 991 ntTSL 5 BASIC19.35■□□□□ 0.69
RNF4P78317 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
RNF4P78317 PARP1-210ENST00000629232 477 ntTSL 5 BASIC19.35■□□□□ 0.69
RNF4P78317 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RNF4P78317 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RNF4P78317 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RNF4P78317 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RNF4P78317 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
RNF4P78317 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC19.35■□□□□ 0.69
RNF4P78317 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
RNF4P78317 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
RNF4P78317 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RNF4P78317 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RNF4P78317 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
RNF4P78317 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RNF4P78317 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
RNF4P78317 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
RNF4P78317 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC19.34■□□□□ 0.69
RNF4P78317 AC245052.3-201ENST00000450182 901 ntBASIC19.34■□□□□ 0.69
RNF4P78317 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
RNF4P78317 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC19.34■□□□□ 0.69
RNF4P78317 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC19.34■□□□□ 0.69
RNF4P78317 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC19.34■□□□□ 0.69
RNF4P78317 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RNF4P78317 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RNF4P78317 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
RNF4P78317 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RNF4P78317 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
RNF4P78317 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RNF4P78317 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RNF4P78317 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RNF4P78317 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms