Protein–RNA interactions for Protein: P56159

GFRA1, GDNF family receptor alpha-1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA1P56159 CYP2T1P-201ENST00000432607 1285 ntBASIC18.8■□□□□ 0.6
GFRA1P56159 AC083906.2-201ENST00000511578 360 ntBASIC18.8■□□□□ 0.6
GFRA1P56159 AL591742.1-201ENST00000604433 565 ntBASIC18.8■□□□□ 0.6
GFRA1P56159 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC18.8■□□□□ 0.6
GFRA1P56159 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC18.8■□□□□ 0.6
GFRA1P56159 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
GFRA1P56159 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
GFRA1P56159 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
GFRA1P56159 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
GFRA1P56159 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC18.8■□□□□ 0.6
GFRA1P56159 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
GFRA1P56159 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
GFRA1P56159 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC18.8■□□□□ 0.6
GFRA1P56159 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
GFRA1P56159 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
GFRA1P56159 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC18.79■□□□□ 0.6
GFRA1P56159 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
GFRA1P56159 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
GFRA1P56159 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
GFRA1P56159 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
GFRA1P56159 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
GFRA1P56159 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
GFRA1P56159 BET1L-204ENST00000410108 637 ntTSL 3 BASIC18.79■□□□□ 0.6
GFRA1P56159 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
GFRA1P56159 AL109923.1-201ENST00000618799 583 ntBASIC18.79■□□□□ 0.6
GFRA1P56159 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC18.79■□□□□ 0.6
GFRA1P56159 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC18.79■□□□□ 0.6
GFRA1P56159 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
GFRA1P56159 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
GFRA1P56159 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
GFRA1P56159 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
GFRA1P56159 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC18.79■□□□□ 0.6
GFRA1P56159 STK25-234ENST00000535007 2459 ntTSL 2 BASIC18.79■□□□□ 0.6
GFRA1P56159 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC18.79■□□□□ 0.6
GFRA1P56159 FBXW4P1-201ENST00000426721 2239 ntBASIC18.78■□□□□ 0.6
GFRA1P56159 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
GFRA1P56159 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
GFRA1P56159 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC18.78■□□□□ 0.6
GFRA1P56159 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC18.78■□□□□ 0.6
GFRA1P56159 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC18.78■□□□□ 0.6
GFRA1P56159 AC091799.1-201ENST00000422823 811 ntBASIC18.78■□□□□ 0.6
GFRA1P56159 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
GFRA1P56159 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC18.78■□□□□ 0.6
GFRA1P56159 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
GFRA1P56159 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
GFRA1P56159 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC18.78■□□□□ 0.6
GFRA1P56159 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
GFRA1P56159 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC18.78■□□□□ 0.6
GFRA1P56159 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
GFRA1P56159 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
GFRA1P56159 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC18.78■□□□□ 0.6
GFRA1P56159 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
GFRA1P56159 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
GFRA1P56159 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
GFRA1P56159 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
GFRA1P56159 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
GFRA1P56159 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
GFRA1P56159 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
GFRA1P56159 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
GFRA1P56159 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC18.77■□□□□ 0.6
GFRA1P56159 GUSBP6-202ENST00000438529 1198 ntBASIC18.77■□□□□ 0.6
GFRA1P56159 TSPY6P-201ENST00000448518 926 ntBASIC18.77■□□□□ 0.6
GFRA1P56159 AF201337.1-201ENST00000520239 748 ntBASIC18.77■□□□□ 0.6
GFRA1P56159 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC18.77■□□□□ 0.6
GFRA1P56159 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
GFRA1P56159 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
GFRA1P56159 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
GFRA1P56159 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC18.77■□□□□ 0.6
GFRA1P56159 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC18.77■□□□□ 0.6
GFRA1P56159 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
GFRA1P56159 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
GFRA1P56159 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
GFRA1P56159 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC18.76■□□□□ 0.59
GFRA1P56159 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
GFRA1P56159 BID-212ENST00000614949 1988 ntTSL 5 BASIC18.76■□□□□ 0.59
GFRA1P56159 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
GFRA1P56159 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
GFRA1P56159 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
GFRA1P56159 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
GFRA1P56159 OR10C1-204ENST00000622521 1039 ntBASIC18.76■□□□□ 0.59
GFRA1P56159 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
GFRA1P56159 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC18.76■□□□□ 0.59
GFRA1P56159 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
GFRA1P56159 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
GFRA1P56159 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
GFRA1P56159 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC18.75■□□□□ 0.59
GFRA1P56159 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC18.75■□□□□ 0.59
GFRA1P56159 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
GFRA1P56159 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC18.75■□□□□ 0.59
GFRA1P56159 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
GFRA1P56159 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
GFRA1P56159 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
GFRA1P56159 AC105036.2-201ENST00000569468 176 ntBASIC18.75■□□□□ 0.59
GFRA1P56159 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC18.75■□□□□ 0.59
GFRA1P56159 AC069236.1-201ENST00000604339 616 ntBASIC18.75■□□□□ 0.59
GFRA1P56159 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC18.75■□□□□ 0.59
GFRA1P56159 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
GFRA1P56159 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC18.75■□□□□ 0.59
GFRA1P56159 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
GFRA1P56159 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms