Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC21.71■■□□□ 1.07
CDH6P55285 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CDH6P55285 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CDH6P55285 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC21.71■■□□□ 1.07
CDH6P55285 SERP1-208ENST00000491660 830 ntTSL 2 BASIC21.71■■□□□ 1.07
CDH6P55285 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC21.71■■□□□ 1.07
CDH6P55285 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC21.71■■□□□ 1.07
CDH6P55285 CCDC92B-201ENST00000575506 885 ntBASIC21.71■■□□□ 1.07
CDH6P55285 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
CDH6P55285 RAB43-208ENST00000615093 783 ntTSL 5 BASIC21.71■■□□□ 1.07
CDH6P55285 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC21.71■■□□□ 1.07
CDH6P55285 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC21.71■■□□□ 1.07
CDH6P55285 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
CDH6P55285 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC21.71■■□□□ 1.07
CDH6P55285 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC21.71■■□□□ 1.07
CDH6P55285 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC21.71■■□□□ 1.07
CDH6P55285 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CDH6P55285 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
CDH6P55285 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC21.71■■□□□ 1.07
CDH6P55285 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CDH6P55285 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CDH6P55285 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
CDH6P55285 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
CDH6P55285 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC21.7■■□□□ 1.06
CDH6P55285 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC21.7■■□□□ 1.06
CDH6P55285 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC21.7■■□□□ 1.06
CDH6P55285 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC21.7■■□□□ 1.06
CDH6P55285 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC21.7■■□□□ 1.06
CDH6P55285 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CDH6P55285 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CDH6P55285 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CDH6P55285 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC21.7■■□□□ 1.06
CDH6P55285 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
CDH6P55285 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
CDH6P55285 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC21.69■■□□□ 1.06
CDH6P55285 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC21.69■■□□□ 1.06
CDH6P55285 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC21.69■■□□□ 1.06
CDH6P55285 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
CDH6P55285 AC008175.2-201ENST00000612840 297 ntBASIC21.69■■□□□ 1.06
CDH6P55285 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CDH6P55285 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
CDH6P55285 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CDH6P55285 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
CDH6P55285 AP004607.4-201ENST00000530158 1459 ntBASIC21.69■■□□□ 1.06
CDH6P55285 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
CDH6P55285 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC21.69■■□□□ 1.06
CDH6P55285 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CDH6P55285 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CDH6P55285 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CDH6P55285 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CDH6P55285 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CDH6P55285 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC21.68■■□□□ 1.06
CDH6P55285 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
CDH6P55285 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
CDH6P55285 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CDH6P55285 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC21.68■■□□□ 1.06
CDH6P55285 KRT18P14-201ENST00000534205 1250 ntBASIC21.68■■□□□ 1.06
CDH6P55285 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC21.68■■□□□ 1.06
CDH6P55285 AC138907.5-202ENST00000569484 235 ntBASIC21.68■■□□□ 1.06
CDH6P55285 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC21.68■■□□□ 1.06
CDH6P55285 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
CDH6P55285 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CDH6P55285 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CDH6P55285 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CDH6P55285 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
CDH6P55285 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CDH6P55285 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CDH6P55285 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC21.68■■□□□ 1.06
CDH6P55285 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
CDH6P55285 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CDH6P55285 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC21.67■■□□□ 1.06
CDH6P55285 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
CDH6P55285 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CDH6P55285 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC21.67■■□□□ 1.06
CDH6P55285 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
CDH6P55285 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
CDH6P55285 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CDH6P55285 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
CDH6P55285 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC21.67■■□□□ 1.06
CDH6P55285 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC21.67■■□□□ 1.06
CDH6P55285 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC21.67■■□□□ 1.06
CDH6P55285 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC21.67■■□□□ 1.06
CDH6P55285 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC21.67■■□□□ 1.06
CDH6P55285 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CDH6P55285 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CDH6P55285 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC21.67■■□□□ 1.06
CDH6P55285 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CDH6P55285 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CDH6P55285 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
CDH6P55285 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
CDH6P55285 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC21.66■■□□□ 1.06
CDH6P55285 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CDH6P55285 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
CDH6P55285 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC21.66■■□□□ 1.06
CDH6P55285 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CDH6P55285 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CDH6P55285 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CDH6P55285 POU5F1P4-201ENST00000413175 1085 ntBASIC21.66■■□□□ 1.06
CDH6P55285 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CDH6P55285 AC104187.1-201ENST00000607510 612 ntBASIC21.66■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms