Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
HMGCS2P54868 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC24.28■■□□□ 1.48
HMGCS2P54868 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC24.28■■□□□ 1.48
HMGCS2P54868 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC24.28■■□□□ 1.48
HMGCS2P54868 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
HMGCS2P54868 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
HMGCS2P54868 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC24.28■■□□□ 1.48
HMGCS2P54868 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
HMGCS2P54868 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
HMGCS2P54868 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
HMGCS2P54868 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
HMGCS2P54868 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC24.27■■□□□ 1.48
HMGCS2P54868 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC24.27■■□□□ 1.48
HMGCS2P54868 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC24.27■■□□□ 1.48
HMGCS2P54868 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC24.27■■□□□ 1.48
HMGCS2P54868 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC24.27■■□□□ 1.48
HMGCS2P54868 AC008403.3-201ENST00000598924 454 ntBASIC24.27■■□□□ 1.48
HMGCS2P54868 C9orf163-202ENST00000624034 2573 ntBASIC24.27■■□□□ 1.48
HMGCS2P54868 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC24.27■■□□□ 1.48
HMGCS2P54868 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC24.27■■□□□ 1.48
HMGCS2P54868 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC24.27■■□□□ 1.48
HMGCS2P54868 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC24.26■■□□□ 1.47
HMGCS2P54868 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
HMGCS2P54868 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
HMGCS2P54868 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
HMGCS2P54868 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
HMGCS2P54868 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
HMGCS2P54868 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
HMGCS2P54868 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC24.26■■□□□ 1.47
HMGCS2P54868 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
HMGCS2P54868 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
HMGCS2P54868 AL596275.1-201ENST00000423464 877 ntBASIC24.26■■□□□ 1.47
HMGCS2P54868 VMO1-204ENST00000441199 741 ntTSL 2 BASIC24.26■■□□□ 1.47
HMGCS2P54868 RPS2P4-201ENST00000476944 856 ntBASIC24.26■■□□□ 1.47
HMGCS2P54868 UNC93B4-201ENST00000505679 747 ntBASIC24.26■■□□□ 1.47
HMGCS2P54868 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC24.26■■□□□ 1.47
HMGCS2P54868 AC068473.5-201ENST00000616428 2072 ntBASIC24.26■■□□□ 1.47
HMGCS2P54868 AC127496.7-201ENST00000625110 1798 ntBASIC24.26■■□□□ 1.47
HMGCS2P54868 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
HMGCS2P54868 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC24.26■■□□□ 1.47
HMGCS2P54868 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC24.26■■□□□ 1.47
HMGCS2P54868 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
HMGCS2P54868 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC24.25■■□□□ 1.47
HMGCS2P54868 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
HMGCS2P54868 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC24.25■■□□□ 1.47
HMGCS2P54868 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
HMGCS2P54868 PEX7-202ENST00000367756 680 ntTSL 3 BASIC24.25■■□□□ 1.47
HMGCS2P54868 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
HMGCS2P54868 MCRIP2P1-201ENST00000394346 511 ntBASIC24.25■■□□□ 1.47
HMGCS2P54868 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
HMGCS2P54868 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
HMGCS2P54868 AC060766.5-201ENST00000590539 871 ntBASIC24.25■■□□□ 1.47
HMGCS2P54868 AL589743.5-201ENST00000616611 1050 ntBASIC24.25■■□□□ 1.47
HMGCS2P54868 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
HMGCS2P54868 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
HMGCS2P54868 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC24.24■■□□□ 1.47
HMGCS2P54868 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
HMGCS2P54868 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
HMGCS2P54868 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC24.24■■□□□ 1.47
HMGCS2P54868 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
HMGCS2P54868 HLA-B-256ENST00000639848 1089 ntBASIC24.24■■□□□ 1.47
HMGCS2P54868 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
HMGCS2P54868 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
HMGCS2P54868 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC24.24■■□□□ 1.47
HMGCS2P54868 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
HMGCS2P54868 FAM99A-202ENST00000538190 1989 ntBASIC24.23■■□□□ 1.47
HMGCS2P54868 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC24.23■■□□□ 1.47
HMGCS2P54868 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC24.23■■□□□ 1.47
HMGCS2P54868 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC24.23■■□□□ 1.47
HMGCS2P54868 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC24.23■■□□□ 1.47
HMGCS2P54868 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC24.23■■□□□ 1.47
HMGCS2P54868 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC24.23■■□□□ 1.47
HMGCS2P54868 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC24.23■■□□□ 1.47
HMGCS2P54868 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC24.23■■□□□ 1.47
HMGCS2P54868 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
HMGCS2P54868 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
HMGCS2P54868 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC24.23■■□□□ 1.47
HMGCS2P54868 NARF-205ENST00000412079 1760 ntTSL 5 BASIC24.23■■□□□ 1.47
HMGCS2P54868 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
HMGCS2P54868 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
HMGCS2P54868 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC24.23■■□□□ 1.47
HMGCS2P54868 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC24.22■■□□□ 1.47
HMGCS2P54868 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
HMGCS2P54868 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC24.22■■□□□ 1.47
HMGCS2P54868 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
HMGCS2P54868 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
HMGCS2P54868 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC24.22■■□□□ 1.47
HMGCS2P54868 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
HMGCS2P54868 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
HMGCS2P54868 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
HMGCS2P54868 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC24.22■■□□□ 1.47
HMGCS2P54868 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC24.22■■□□□ 1.47
HMGCS2P54868 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC24.22■■□□□ 1.47
HMGCS2P54868 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC24.22■■□□□ 1.47
HMGCS2P54868 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC24.22■■□□□ 1.47
HMGCS2P54868 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
HMGCS2P54868 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
HMGCS2P54868 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
HMGCS2P54868 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC24.21■■□□□ 1.47
HMGCS2P54868 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms