Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
MSX2P35548 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
MSX2P35548 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
MSX2P35548 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC19.92■□□□□ 0.78
MSX2P35548 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
MSX2P35548 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
MSX2P35548 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC19.92■□□□□ 0.78
MSX2P35548 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
MSX2P35548 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC19.92■□□□□ 0.78
MSX2P35548 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
MSX2P35548 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
MSX2P35548 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC19.92■□□□□ 0.78
MSX2P35548 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
MSX2P35548 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC19.92■□□□□ 0.78
MSX2P35548 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
MSX2P35548 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC19.91■□□□□ 0.78
MSX2P35548 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
MSX2P35548 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
MSX2P35548 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.91■□□□□ 0.78
MSX2P35548 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
MSX2P35548 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
MSX2P35548 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC19.91■□□□□ 0.78
MSX2P35548 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
MSX2P35548 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
MSX2P35548 AP004607.7-201ENST00000527152 1677 ntBASIC19.91■□□□□ 0.78
MSX2P35548 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
MSX2P35548 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
MSX2P35548 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
MSX2P35548 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
MSX2P35548 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC19.9■□□□□ 0.78
MSX2P35548 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC19.9■□□□□ 0.78
MSX2P35548 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
MSX2P35548 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC19.9■□□□□ 0.78
MSX2P35548 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC19.9■□□□□ 0.78
MSX2P35548 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
MSX2P35548 TSPY9P-201ENST00000440215 945 ntBASIC19.9■□□□□ 0.78
MSX2P35548 TSPY11P-201ENST00000442607 1045 ntBASIC19.9■□□□□ 0.78
MSX2P35548 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
MSX2P35548 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC19.9■□□□□ 0.78
MSX2P35548 KRT125P-201ENST00000546827 989 ntBASIC19.9■□□□□ 0.78
MSX2P35548 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC19.9■□□□□ 0.78
MSX2P35548 MIR4787-201ENST00000607364 84 ntBASIC19.9■□□□□ 0.78
MSX2P35548 AC241377.3-202ENST00000626088 1088 ntBASIC19.9■□□□□ 0.78
MSX2P35548 AC241585.3-202ENST00000628937 1088 ntBASIC19.9■□□□□ 0.78
MSX2P35548 AC245100.8-202ENST00000629247 1058 ntBASIC19.9■□□□□ 0.78
MSX2P35548 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
MSX2P35548 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
MSX2P35548 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
MSX2P35548 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
MSX2P35548 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
MSX2P35548 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC19.9■□□□□ 0.78
MSX2P35548 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
MSX2P35548 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
MSX2P35548 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
MSX2P35548 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC19.9■□□□□ 0.78
MSX2P35548 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
MSX2P35548 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.78
MSX2P35548 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
MSX2P35548 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
MSX2P35548 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
MSX2P35548 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
MSX2P35548 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
MSX2P35548 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
MSX2P35548 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
MSX2P35548 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC19.89■□□□□ 0.77
MSX2P35548 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
MSX2P35548 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
MSX2P35548 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC19.89■□□□□ 0.77
MSX2P35548 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
MSX2P35548 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
MSX2P35548 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
MSX2P35548 AC020907.5-201ENST00000624372 1936 ntBASIC19.88■□□□□ 0.77
MSX2P35548 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
MSX2P35548 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
MSX2P35548 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
MSX2P35548 AC010141.3-201ENST00000456659 717 ntBASIC19.88■□□□□ 0.77
MSX2P35548 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC19.88■□□□□ 0.77
MSX2P35548 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
MSX2P35548 AC068587.7-201ENST00000641602 218 ntBASIC19.88■□□□□ 0.77
MSX2P35548 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
MSX2P35548 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
MSX2P35548 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
MSX2P35548 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC19.88■□□□□ 0.77
MSX2P35548 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC19.88■□□□□ 0.77
MSX2P35548 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC19.88■□□□□ 0.77
MSX2P35548 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.88■□□□□ 0.77
MSX2P35548 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC19.88■□□□□ 0.77
MSX2P35548 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
MSX2P35548 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC19.87■□□□□ 0.77
MSX2P35548 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
MSX2P35548 DET1-207ENST00000564406 2315 ntTSL 2 BASIC19.87■□□□□ 0.77
MSX2P35548 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
MSX2P35548 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
MSX2P35548 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
MSX2P35548 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
MSX2P35548 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
MSX2P35548 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
MSX2P35548 USP39-204ENST00000409766 2033 ntTSL 2 BASIC19.87■□□□□ 0.77
MSX2P35548 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC19.87■□□□□ 0.77
MSX2P35548 AL512408.1-201ENST00000569378 2000 ntBASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms