Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SDC1P18827 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SDC1P18827 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
SDC1P18827 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SDC1P18827 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC19.92■□□□□ 0.78
SDC1P18827 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC19.92■□□□□ 0.78
SDC1P18827 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SDC1P18827 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
SDC1P18827 ERF-202ENST00000440177 2032 ntTSL 2 BASIC19.92■□□□□ 0.78
SDC1P18827 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC19.91■□□□□ 0.78
SDC1P18827 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SDC1P18827 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
SDC1P18827 NT5C3AP1-201ENST00000394500 1012 ntBASIC19.91■□□□□ 0.78
SDC1P18827 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SDC1P18827 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC19.91■□□□□ 0.78
SDC1P18827 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC19.91■□□□□ 0.78
SDC1P18827 AC053503.5-201ENST00000601508 636 ntBASIC19.91■□□□□ 0.78
SDC1P18827 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC19.91■□□□□ 0.78
SDC1P18827 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC19.91■□□□□ 0.78
SDC1P18827 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC19.91■□□□□ 0.78
SDC1P18827 ME2-216ENST00000639850 2331 ntTSL 5 BASIC19.91■□□□□ 0.78
SDC1P18827 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
SDC1P18827 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SDC1P18827 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SDC1P18827 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
SDC1P18827 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC19.9■□□□□ 0.78
SDC1P18827 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC19.9■□□□□ 0.78
SDC1P18827 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SDC1P18827 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SDC1P18827 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC19.9■□□□□ 0.78
SDC1P18827 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SDC1P18827 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC19.9■□□□□ 0.78
SDC1P18827 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SDC1P18827 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
SDC1P18827 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
SDC1P18827 AC121338.2-201ENST00000622535 1744 ntBASIC19.9■□□□□ 0.78
SDC1P18827 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
SDC1P18827 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SDC1P18827 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SDC1P18827 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SDC1P18827 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC19.89■□□□□ 0.77
SDC1P18827 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
SDC1P18827 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
SDC1P18827 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
SDC1P18827 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC19.89■□□□□ 0.77
SDC1P18827 MTURN-203ENST00000409688 843 ntTSL 2 BASIC19.89■□□□□ 0.77
SDC1P18827 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC19.89■□□□□ 0.77
SDC1P18827 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SDC1P18827 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
SDC1P18827 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC19.89■□□□□ 0.77
SDC1P18827 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
SDC1P18827 RHOF-204ENST00000537265 699 ntTSL 2 BASIC19.89■□□□□ 0.77
SDC1P18827 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC19.89■□□□□ 0.77
SDC1P18827 AC142381.2-201ENST00000566120 298 ntBASIC19.89■□□□□ 0.77
SDC1P18827 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC19.89■□□□□ 0.77
SDC1P18827 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SDC1P18827 MIR6084-201ENST00000622012 110 ntBASIC19.89■□□□□ 0.77
SDC1P18827 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SDC1P18827 RALB-208ENST00000631312 311 ntTSL 5 BASIC19.89■□□□□ 0.77
SDC1P18827 CPT2-209ENST00000636935 803 ntTSL 5 BASIC19.89■□□□□ 0.77
SDC1P18827 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SDC1P18827 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SDC1P18827 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SDC1P18827 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SDC1P18827 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC19.88■□□□□ 0.77
SDC1P18827 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
SDC1P18827 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SDC1P18827 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SDC1P18827 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SDC1P18827 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC19.88■□□□□ 0.77
SDC1P18827 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SDC1P18827 AL358852.1-201ENST00000623174 1268 ntBASIC19.88■□□□□ 0.77
SDC1P18827 SLC25A24-204ENST00000569674 2357 ntBASIC19.88■□□□□ 0.77
SDC1P18827 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC19.88■□□□□ 0.77
SDC1P18827 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SDC1P18827 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SDC1P18827 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SDC1P18827 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC19.88■□□□□ 0.77
SDC1P18827 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SDC1P18827 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SDC1P18827 AC061975.6-201ENST00000579045 1553 ntBASIC19.87■□□□□ 0.77
SDC1P18827 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
SDC1P18827 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SDC1P18827 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
SDC1P18827 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC19.87■□□□□ 0.77
SDC1P18827 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SDC1P18827 STOX2-205ENST00000513034 807 ntTSL 3 BASIC19.87■□□□□ 0.77
SDC1P18827 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SDC1P18827 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
SDC1P18827 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SDC1P18827 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SDC1P18827 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SDC1P18827 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
SDC1P18827 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
SDC1P18827 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC19.87■□□□□ 0.77
SDC1P18827 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
SDC1P18827 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SDC1P18827 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
SDC1P18827 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SDC1P18827 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms