Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LDLRP01130 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LDLRP01130 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.09■□□□□ 0.81
LDLRP01130 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LDLRP01130 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC20.09■□□□□ 0.81
LDLRP01130 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LDLRP01130 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
LDLRP01130 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC20.09■□□□□ 0.81
LDLRP01130 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LDLRP01130 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
LDLRP01130 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
LDLRP01130 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC20.08■□□□□ 0.81
LDLRP01130 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
LDLRP01130 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
LDLRP01130 LINC01006-201ENST00000333319 2292 ntBASIC20.08■□□□□ 0.81
LDLRP01130 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
LDLRP01130 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC20.08■□□□□ 0.81
LDLRP01130 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC20.08■□□□□ 0.81
LDLRP01130 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC20.08■□□□□ 0.81
LDLRP01130 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC20.08■□□□□ 0.81
LDLRP01130 TERF1P2-201ENST00000583350 1212 ntBASIC20.08■□□□□ 0.81
LDLRP01130 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC20.08■□□□□ 0.81
LDLRP01130 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
LDLRP01130 pRNA.6-201ENST00000610482 90 ntBASIC20.08■□□□□ 0.81
LDLRP01130 pRNA.5-201ENST00000612139 90 ntBASIC20.08■□□□□ 0.81
LDLRP01130 pRNA.11-201ENST00000618423 90 ntBASIC20.08■□□□□ 0.81
LDLRP01130 pRNA.13-201ENST00000619112 90 ntBASIC20.08■□□□□ 0.81
LDLRP01130 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
LDLRP01130 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
LDLRP01130 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
LDLRP01130 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
LDLRP01130 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
LDLRP01130 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
LDLRP01130 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC20.08■□□□□ 0.8
LDLRP01130 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC20.08■□□□□ 0.8
LDLRP01130 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LDLRP01130 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LDLRP01130 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC20.07■□□□□ 0.8
LDLRP01130 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
LDLRP01130 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
LDLRP01130 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC20.07■□□□□ 0.8
LDLRP01130 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC20.07■□□□□ 0.8
LDLRP01130 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC20.07■□□□□ 0.8
LDLRP01130 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LDLRP01130 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LDLRP01130 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LDLRP01130 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC20.07■□□□□ 0.8
LDLRP01130 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
LDLRP01130 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC20.07■□□□□ 0.8
LDLRP01130 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
LDLRP01130 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LDLRP01130 ABHD17AP1-201ENST00000358206 933 ntBASIC20.06■□□□□ 0.8
LDLRP01130 NKILA-201ENST00000613231 537 ntTSL 4 BASIC20.06■□□□□ 0.8
LDLRP01130 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC20.06■□□□□ 0.8
LDLRP01130 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LDLRP01130 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LDLRP01130 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LDLRP01130 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
LDLRP01130 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
LDLRP01130 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LDLRP01130 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LDLRP01130 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
LDLRP01130 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LDLRP01130 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LDLRP01130 AC080038.1-201ENST00000611274 1154 ntBASIC20.05■□□□□ 0.8
LDLRP01130 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC20.05■□□□□ 0.8
LDLRP01130 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LDLRP01130 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
LDLRP01130 LINC02228-203ENST00000641970 1355 ntBASIC20.05■□□□□ 0.8
LDLRP01130 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC20.05■□□□□ 0.8
LDLRP01130 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
LDLRP01130 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
LDLRP01130 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LDLRP01130 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LDLRP01130 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC20.05■□□□□ 0.8
LDLRP01130 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC20.04■□□□□ 0.8
LDLRP01130 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LDLRP01130 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LDLRP01130 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.04■□□□□ 0.8
LDLRP01130 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20.04■□□□□ 0.8
LDLRP01130 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC20.04■□□□□ 0.8
LDLRP01130 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC20.04■□□□□ 0.8
LDLRP01130 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LDLRP01130 EMC9-206ENST00000560403 872 ntTSL 2 BASIC20.04■□□□□ 0.8
LDLRP01130 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC20.04■□□□□ 0.8
LDLRP01130 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LDLRP01130 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.04■□□□□ 0.8
LDLRP01130 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
LDLRP01130 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC20.04■□□□□ 0.8
LDLRP01130 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
LDLRP01130 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
LDLRP01130 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
LDLRP01130 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LDLRP01130 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LDLRP01130 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
LDLRP01130 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
LDLRP01130 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LDLRP01130 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC20.03■□□□□ 0.8
LDLRP01130 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
LDLRP01130 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms