Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
USH1CQ9Y6N9 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
USH1CQ9Y6N9 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
USH1CQ9Y6N9 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
USH1CQ9Y6N9 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
USH1CQ9Y6N9 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
USH1CQ9Y6N9 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC20.82■□□□□ 0.92
USH1CQ9Y6N9 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
USH1CQ9Y6N9 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
USH1CQ9Y6N9 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
USH1CQ9Y6N9 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
USH1CQ9Y6N9 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
USH1CQ9Y6N9 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
USH1CQ9Y6N9 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
USH1CQ9Y6N9 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC20.82■□□□□ 0.92
USH1CQ9Y6N9 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
USH1CQ9Y6N9 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC20.81■□□□□ 0.92
USH1CQ9Y6N9 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC20.81■□□□□ 0.92
USH1CQ9Y6N9 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC20.81■□□□□ 0.92
USH1CQ9Y6N9 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
USH1CQ9Y6N9 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC20.81■□□□□ 0.92
USH1CQ9Y6N9 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC20.81■□□□□ 0.92
USH1CQ9Y6N9 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC20.81■□□□□ 0.92
USH1CQ9Y6N9 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
USH1CQ9Y6N9 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
USH1CQ9Y6N9 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC20.81■□□□□ 0.92
USH1CQ9Y6N9 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC20.81■□□□□ 0.92
USH1CQ9Y6N9 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
USH1CQ9Y6N9 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
USH1CQ9Y6N9 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC20.81■□□□□ 0.92
USH1CQ9Y6N9 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
USH1CQ9Y6N9 GTSE1-AS1-202ENST00000623117 1518 ntBASIC20.81■□□□□ 0.92
USH1CQ9Y6N9 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
USH1CQ9Y6N9 PCDHAC2-203ENST00000615316 3011 ntBASIC20.81■□□□□ 0.92
USH1CQ9Y6N9 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC20.81■□□□□ 0.92
USH1CQ9Y6N9 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
USH1CQ9Y6N9 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC20.81■□□□□ 0.92
USH1CQ9Y6N9 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
USH1CQ9Y6N9 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC20.81■□□□□ 0.92
USH1CQ9Y6N9 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
USH1CQ9Y6N9 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC20.8■□□□□ 0.92
USH1CQ9Y6N9 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
USH1CQ9Y6N9 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC20.8■□□□□ 0.92
USH1CQ9Y6N9 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC20.8■□□□□ 0.92
USH1CQ9Y6N9 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
USH1CQ9Y6N9 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
USH1CQ9Y6N9 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
USH1CQ9Y6N9 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC20.8■□□□□ 0.92
USH1CQ9Y6N9 PRTG-204ENST00000561292 833 ntTSL 3 BASIC20.8■□□□□ 0.92
USH1CQ9Y6N9 AL451085.2-201ENST00000605085 799 ntBASIC20.8■□□□□ 0.92
USH1CQ9Y6N9 EXOG-217ENST00000630638 197 ntTSL 5 BASIC20.8■□□□□ 0.92
USH1CQ9Y6N9 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
USH1CQ9Y6N9 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
USH1CQ9Y6N9 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
USH1CQ9Y6N9 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC20.8■□□□□ 0.92
USH1CQ9Y6N9 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
USH1CQ9Y6N9 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC20.8■□□□□ 0.92
USH1CQ9Y6N9 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC20.8■□□□□ 0.92
USH1CQ9Y6N9 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
USH1CQ9Y6N9 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
USH1CQ9Y6N9 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
USH1CQ9Y6N9 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
USH1CQ9Y6N9 AC133637.1-201ENST00000624115 1537 ntBASIC20.79■□□□□ 0.92
USH1CQ9Y6N9 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
USH1CQ9Y6N9 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC20.79■□□□□ 0.92
USH1CQ9Y6N9 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC20.79■□□□□ 0.92
USH1CQ9Y6N9 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
USH1CQ9Y6N9 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.79■□□□□ 0.92
USH1CQ9Y6N9 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
USH1CQ9Y6N9 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
USH1CQ9Y6N9 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC20.78■□□□□ 0.92
USH1CQ9Y6N9 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
USH1CQ9Y6N9 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
USH1CQ9Y6N9 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
USH1CQ9Y6N9 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
USH1CQ9Y6N9 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC20.78■□□□□ 0.92
USH1CQ9Y6N9 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
USH1CQ9Y6N9 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
USH1CQ9Y6N9 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
USH1CQ9Y6N9 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
USH1CQ9Y6N9 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
USH1CQ9Y6N9 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC20.78■□□□□ 0.92
USH1CQ9Y6N9 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
USH1CQ9Y6N9 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC20.78■□□□□ 0.92
USH1CQ9Y6N9 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC20.78■□□□□ 0.92
USH1CQ9Y6N9 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
USH1CQ9Y6N9 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
USH1CQ9Y6N9 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
USH1CQ9Y6N9 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
USH1CQ9Y6N9 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC20.78■□□□□ 0.92
USH1CQ9Y6N9 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
USH1CQ9Y6N9 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
USH1CQ9Y6N9 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
USH1CQ9Y6N9 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC20.77■□□□□ 0.92
USH1CQ9Y6N9 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
USH1CQ9Y6N9 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
USH1CQ9Y6N9 RNF146-205ENST00000477776 762 ntTSL 3 BASIC20.77■□□□□ 0.92
USH1CQ9Y6N9 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
USH1CQ9Y6N9 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
USH1CQ9Y6N9 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC20.77■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms