Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
PCDHA3Q9Y5H8 PEMT-206ENST00000435340 960 ntTSL 5 BASIC21.92■■□□□ 1.1
PCDHA3Q9Y5H8 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC21.92■■□□□ 1.1
PCDHA3Q9Y5H8 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC21.92■■□□□ 1.1
PCDHA3Q9Y5H8 GRAMD4P4-201ENST00000613563 1115 ntBASIC21.92■■□□□ 1.1
PCDHA3Q9Y5H8 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
PCDHA3Q9Y5H8 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
PCDHA3Q9Y5H8 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
PCDHA3Q9Y5H8 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
PCDHA3Q9Y5H8 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
PCDHA3Q9Y5H8 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
PCDHA3Q9Y5H8 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC21.92■■□□□ 1.1
PCDHA3Q9Y5H8 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC21.92■■□□□ 1.1
PCDHA3Q9Y5H8 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
PCDHA3Q9Y5H8 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
PCDHA3Q9Y5H8 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
PCDHA3Q9Y5H8 ME2-216ENST00000639850 2331 ntTSL 5 BASIC21.91■■□□□ 1.1
PCDHA3Q9Y5H8 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC21.91■■□□□ 1.1
PCDHA3Q9Y5H8 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
PCDHA3Q9Y5H8 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC21.91■■□□□ 1.1
PCDHA3Q9Y5H8 MFF-208ENST00000409616 1247 ntTSL 5 BASIC21.91■■□□□ 1.1
PCDHA3Q9Y5H8 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC21.91■■□□□ 1.1
PCDHA3Q9Y5H8 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
PCDHA3Q9Y5H8 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC21.91■■□□□ 1.1
PCDHA3Q9Y5H8 RARG-204ENST00000543726 1779 ntTSL 2 BASIC21.91■■□□□ 1.1
PCDHA3Q9Y5H8 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
PCDHA3Q9Y5H8 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC21.91■■□□□ 1.1
PCDHA3Q9Y5H8 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC21.9■■□□□ 1.1
PCDHA3Q9Y5H8 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
PCDHA3Q9Y5H8 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
PCDHA3Q9Y5H8 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
PCDHA3Q9Y5H8 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
PCDHA3Q9Y5H8 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
PCDHA3Q9Y5H8 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC21.9■■□□□ 1.1
PCDHA3Q9Y5H8 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
PCDHA3Q9Y5H8 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC21.9■■□□□ 1.1
PCDHA3Q9Y5H8 EDA-201ENST00000338901 1233 ntBASIC21.9■■□□□ 1.1
PCDHA3Q9Y5H8 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
PCDHA3Q9Y5H8 AP001330.3-201ENST00000520123 633 ntBASIC21.9■■□□□ 1.1
PCDHA3Q9Y5H8 MAG-206ENST00000597035 542 ntTSL 4 BASIC21.9■■□□□ 1.1
PCDHA3Q9Y5H8 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
PCDHA3Q9Y5H8 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC21.9■■□□□ 1.1
PCDHA3Q9Y5H8 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
PCDHA3Q9Y5H8 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
PCDHA3Q9Y5H8 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
PCDHA3Q9Y5H8 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC21.89■■□□□ 1.1
PCDHA3Q9Y5H8 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC21.89■■□□□ 1.1
PCDHA3Q9Y5H8 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
PCDHA3Q9Y5H8 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.09
PCDHA3Q9Y5H8 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
PCDHA3Q9Y5H8 MIR572-201ENST00000384983 95 ntBASIC21.89■■□□□ 1.09
PCDHA3Q9Y5H8 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
PCDHA3Q9Y5H8 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC21.89■■□□□ 1.09
PCDHA3Q9Y5H8 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
PCDHA3Q9Y5H8 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC21.89■■□□□ 1.09
PCDHA3Q9Y5H8 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.09
PCDHA3Q9Y5H8 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC21.89■■□□□ 1.09
PCDHA3Q9Y5H8 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC21.88■■□□□ 1.09
PCDHA3Q9Y5H8 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
PCDHA3Q9Y5H8 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
PCDHA3Q9Y5H8 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC21.88■■□□□ 1.09
PCDHA3Q9Y5H8 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC21.88■■□□□ 1.09
PCDHA3Q9Y5H8 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
PCDHA3Q9Y5H8 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC21.88■■□□□ 1.09
PCDHA3Q9Y5H8 RNF146-206ENST00000480444 843 ntTSL 2 BASIC21.88■■□□□ 1.09
PCDHA3Q9Y5H8 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC21.88■■□□□ 1.09
PCDHA3Q9Y5H8 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
PCDHA3Q9Y5H8 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
PCDHA3Q9Y5H8 AC121338.2-201ENST00000622535 1744 ntBASIC21.88■■□□□ 1.09
PCDHA3Q9Y5H8 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
PCDHA3Q9Y5H8 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC21.88■■□□□ 1.09
PCDHA3Q9Y5H8 RASA4CP-201ENST00000424092 1398 ntBASIC21.87■■□□□ 1.09
PCDHA3Q9Y5H8 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
PCDHA3Q9Y5H8 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC21.87■■□□□ 1.09
PCDHA3Q9Y5H8 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
PCDHA3Q9Y5H8 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
PCDHA3Q9Y5H8 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
PCDHA3Q9Y5H8 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
PCDHA3Q9Y5H8 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC21.87■■□□□ 1.09
PCDHA3Q9Y5H8 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC21.87■■□□□ 1.09
PCDHA3Q9Y5H8 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC21.87■■□□□ 1.09
PCDHA3Q9Y5H8 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC21.87■■□□□ 1.09
PCDHA3Q9Y5H8 AL355001.2-201ENST00000620617 1191 ntBASIC21.87■■□□□ 1.09
PCDHA3Q9Y5H8 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
PCDHA3Q9Y5H8 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
PCDHA3Q9Y5H8 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
PCDHA3Q9Y5H8 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC21.87■■□□□ 1.09
PCDHA3Q9Y5H8 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC21.87■■□□□ 1.09
PCDHA3Q9Y5H8 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
PCDHA3Q9Y5H8 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
PCDHA3Q9Y5H8 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
PCDHA3Q9Y5H8 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
PCDHA3Q9Y5H8 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
PCDHA3Q9Y5H8 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
PCDHA3Q9Y5H8 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
PCDHA3Q9Y5H8 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC21.86■■□□□ 1.09
PCDHA3Q9Y5H8 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC21.86■■□□□ 1.09
PCDHA3Q9Y5H8 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
PCDHA3Q9Y5H8 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
PCDHA3Q9Y5H8 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms