Protein–RNA interactions for Protein: Q9Y2J0

RPH3A, Rabphilin-3A, humanhuman

Predicted RBP Predictions only

Length 694 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPH3AQ9Y2J0 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RPH3AQ9Y2J0 ME3-201ENST00000323418 1068 ntTSL 5 BASIC19.17■□□□□ 0.66
RPH3AQ9Y2J0 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
RPH3AQ9Y2J0 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC19.17■□□□□ 0.66
RPH3AQ9Y2J0 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC19.17■□□□□ 0.66
RPH3AQ9Y2J0 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RPH3AQ9Y2J0 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC19.16■□□□□ 0.66
RPH3AQ9Y2J0 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RPH3AQ9Y2J0 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
RPH3AQ9Y2J0 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
RPH3AQ9Y2J0 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC19.16■□□□□ 0.66
RPH3AQ9Y2J0 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
RPH3AQ9Y2J0 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
RPH3AQ9Y2J0 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RPH3AQ9Y2J0 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC19.16■□□□□ 0.66
RPH3AQ9Y2J0 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RPH3AQ9Y2J0 AC138907.5-202ENST00000569484 235 ntBASIC19.16■□□□□ 0.66
RPH3AQ9Y2J0 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RPH3AQ9Y2J0 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
RPH3AQ9Y2J0 RARG-204ENST00000543726 1779 ntTSL 2 BASIC19.16■□□□□ 0.66
RPH3AQ9Y2J0 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RPH3AQ9Y2J0 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC19.16■□□□□ 0.66
RPH3AQ9Y2J0 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RPH3AQ9Y2J0 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
RPH3AQ9Y2J0 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
RPH3AQ9Y2J0 RNF165-205ENST00000588679 2904 ntBASIC19.15■□□□□ 0.66
RPH3AQ9Y2J0 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC19.15■□□□□ 0.66
RPH3AQ9Y2J0 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.15■□□□□ 0.66
RPH3AQ9Y2J0 HSCB-202ENST00000398941 955 ntTSL 2 BASIC19.15■□□□□ 0.66
RPH3AQ9Y2J0 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC19.15■□□□□ 0.66
RPH3AQ9Y2J0 AC010141.2-201ENST00000452426 721 ntBASIC19.15■□□□□ 0.66
RPH3AQ9Y2J0 RNF146-206ENST00000480444 843 ntTSL 2 BASIC19.15■□□□□ 0.66
RPH3AQ9Y2J0 SPI1-203ENST00000533030 661 ntTSL 2 BASIC19.15■□□□□ 0.66
RPH3AQ9Y2J0 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC19.15■□□□□ 0.66
RPH3AQ9Y2J0 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
RPH3AQ9Y2J0 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
RPH3AQ9Y2J0 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
RPH3AQ9Y2J0 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC19.15■□□□□ 0.66
RPH3AQ9Y2J0 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RPH3AQ9Y2J0 WWC2-AS2-201ENST00000578387 2183 ntBASIC19.15■□□□□ 0.66
RPH3AQ9Y2J0 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
RPH3AQ9Y2J0 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RPH3AQ9Y2J0 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RPH3AQ9Y2J0 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.66
RPH3AQ9Y2J0 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
RPH3AQ9Y2J0 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC19.14■□□□□ 0.66
RPH3AQ9Y2J0 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC19.14■□□□□ 0.66
RPH3AQ9Y2J0 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RPH3AQ9Y2J0 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RPH3AQ9Y2J0 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
RPH3AQ9Y2J0 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RPH3AQ9Y2J0 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC19.14■□□□□ 0.65
RPH3AQ9Y2J0 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
RPH3AQ9Y2J0 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RPH3AQ9Y2J0 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
RPH3AQ9Y2J0 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC19.14■□□□□ 0.65
RPH3AQ9Y2J0 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC19.14■□□□□ 0.65
RPH3AQ9Y2J0 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
RPH3AQ9Y2J0 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC19.14■□□□□ 0.65
RPH3AQ9Y2J0 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RPH3AQ9Y2J0 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RPH3AQ9Y2J0 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RPH3AQ9Y2J0 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RPH3AQ9Y2J0 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RPH3AQ9Y2J0 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC19.14■□□□□ 0.65
RPH3AQ9Y2J0 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RPH3AQ9Y2J0 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.14■□□□□ 0.65
RPH3AQ9Y2J0 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC19.14■□□□□ 0.65
RPH3AQ9Y2J0 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RPH3AQ9Y2J0 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC19.13■□□□□ 0.65
RPH3AQ9Y2J0 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RPH3AQ9Y2J0 NAA20-201ENST00000310450 920 ntTSL 2 BASIC19.13■□□□□ 0.65
RPH3AQ9Y2J0 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC19.13■□□□□ 0.65
RPH3AQ9Y2J0 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC19.13■□□□□ 0.65
RPH3AQ9Y2J0 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC19.13■□□□□ 0.65
RPH3AQ9Y2J0 UBE2DNL-204ENST00000602536 740 ntBASIC19.13■□□□□ 0.65
RPH3AQ9Y2J0 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC19.13■□□□□ 0.65
RPH3AQ9Y2J0 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC19.13■□□□□ 0.65
RPH3AQ9Y2J0 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
RPH3AQ9Y2J0 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RPH3AQ9Y2J0 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC19.13■□□□□ 0.65
RPH3AQ9Y2J0 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RPH3AQ9Y2J0 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
RPH3AQ9Y2J0 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC19.13■□□□□ 0.65
RPH3AQ9Y2J0 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RPH3AQ9Y2J0 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC19.13■□□□□ 0.65
RPH3AQ9Y2J0 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
RPH3AQ9Y2J0 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
RPH3AQ9Y2J0 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC19.12■□□□□ 0.65
RPH3AQ9Y2J0 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC19.12■□□□□ 0.65
RPH3AQ9Y2J0 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
RPH3AQ9Y2J0 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
RPH3AQ9Y2J0 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RPH3AQ9Y2J0 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RPH3AQ9Y2J0 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
RPH3AQ9Y2J0 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
RPH3AQ9Y2J0 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
RPH3AQ9Y2J0 AC006015.1-201ENST00000429970 570 ntBASIC19.12■□□□□ 0.65
RPH3AQ9Y2J0 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC19.12■□□□□ 0.65
RPH3AQ9Y2J0 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC19.12■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms