Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
VPS4AQ9UN37 GAS2L1P2-201ENST00000436355 1356 ntBASIC20.21■□□□□ 0.83
VPS4AQ9UN37 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS4AQ9UN37 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
VPS4AQ9UN37 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS4AQ9UN37 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS4AQ9UN37 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS4AQ9UN37 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
VPS4AQ9UN37 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS4AQ9UN37 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS4AQ9UN37 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC20.2■□□□□ 0.82
VPS4AQ9UN37 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
VPS4AQ9UN37 TMEM191A-211ENST00000637163 1067 ntBASIC20.2■□□□□ 0.82
VPS4AQ9UN37 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
VPS4AQ9UN37 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS4AQ9UN37 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS4AQ9UN37 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC20.2■□□□□ 0.82
VPS4AQ9UN37 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC20.2■□□□□ 0.82
VPS4AQ9UN37 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS4AQ9UN37 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS4AQ9UN37 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS4AQ9UN37 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS4AQ9UN37 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
VPS4AQ9UN37 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS4AQ9UN37 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
VPS4AQ9UN37 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC20.19■□□□□ 0.82
VPS4AQ9UN37 AC006015.1-201ENST00000429970 570 ntBASIC20.19■□□□□ 0.82
VPS4AQ9UN37 AC026185.1-201ENST00000445748 174 ntBASIC20.19■□□□□ 0.82
VPS4AQ9UN37 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS4AQ9UN37 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC20.19■□□□□ 0.82
VPS4AQ9UN37 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC20.19■□□□□ 0.82
VPS4AQ9UN37 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
VPS4AQ9UN37 AL034346.1-201ENST00000568244 1277 ntBASIC20.19■□□□□ 0.82
VPS4AQ9UN37 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
VPS4AQ9UN37 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
VPS4AQ9UN37 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS4AQ9UN37 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
VPS4AQ9UN37 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
VPS4AQ9UN37 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC20.18■□□□□ 0.82
VPS4AQ9UN37 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS4AQ9UN37 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS4AQ9UN37 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
VPS4AQ9UN37 AL355802.2-201ENST00000402069 882 ntBASIC20.18■□□□□ 0.82
VPS4AQ9UN37 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC20.18■□□□□ 0.82
VPS4AQ9UN37 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC20.18■□□□□ 0.82
VPS4AQ9UN37 AC073111.5-205ENST00000641717 521 ntBASIC20.18■□□□□ 0.82
VPS4AQ9UN37 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS4AQ9UN37 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
VPS4AQ9UN37 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
VPS4AQ9UN37 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
VPS4AQ9UN37 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC20.18■□□□□ 0.82
VPS4AQ9UN37 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC20.17■□□□□ 0.82
VPS4AQ9UN37 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC20.17■□□□□ 0.82
VPS4AQ9UN37 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS4AQ9UN37 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
VPS4AQ9UN37 CDCA4P2-201ENST00000441182 718 ntBASIC20.17■□□□□ 0.82
VPS4AQ9UN37 AC006970.2-201ENST00000450065 779 ntBASIC20.17■□□□□ 0.82
VPS4AQ9UN37 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS4AQ9UN37 AC104771.1-201ENST00000603335 964 ntBASIC20.17■□□□□ 0.82
VPS4AQ9UN37 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC20.17■□□□□ 0.82
VPS4AQ9UN37 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC20.17■□□□□ 0.82
VPS4AQ9UN37 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS4AQ9UN37 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
VPS4AQ9UN37 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
VPS4AQ9UN37 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
VPS4AQ9UN37 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS4AQ9UN37 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
VPS4AQ9UN37 AF106564.1-201ENST00000607058 2553 ntBASIC20.17■□□□□ 0.82
VPS4AQ9UN37 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS4AQ9UN37 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC20.16■□□□□ 0.82
VPS4AQ9UN37 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
VPS4AQ9UN37 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC20.16■□□□□ 0.82
VPS4AQ9UN37 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS4AQ9UN37 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS4AQ9UN37 FEM1AP4-201ENST00000443167 1987 ntBASIC20.16■□□□□ 0.82
VPS4AQ9UN37 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS4AQ9UN37 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC20.16■□□□□ 0.82
VPS4AQ9UN37 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS4AQ9UN37 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC20.16■□□□□ 0.82
VPS4AQ9UN37 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS4AQ9UN37 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS4AQ9UN37 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS4AQ9UN37 MFF-203ENST00000349901 1716 ntTSL 2 BASIC20.16■□□□□ 0.82
VPS4AQ9UN37 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.16■□□□□ 0.82
VPS4AQ9UN37 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS4AQ9UN37 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS4AQ9UN37 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS4AQ9UN37 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC20.15■□□□□ 0.82
VPS4AQ9UN37 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS4AQ9UN37 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC20.15■□□□□ 0.82
VPS4AQ9UN37 PPP1R14BP3-201ENST00000509033 445 ntBASIC20.15■□□□□ 0.82
VPS4AQ9UN37 AP005435.1-201ENST00000529293 1178 ntBASIC20.15■□□□□ 0.82
VPS4AQ9UN37 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC20.15■□□□□ 0.82
VPS4AQ9UN37 GALNS-213ENST00000569433 723 ntTSL 3 BASIC20.15■□□□□ 0.82
VPS4AQ9UN37 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC20.15■□□□□ 0.82
VPS4AQ9UN37 AL109923.1-201ENST00000618799 583 ntBASIC20.15■□□□□ 0.82
VPS4AQ9UN37 AC105233.4-201ENST00000642045 216 ntBASIC20.15■□□□□ 0.82
VPS4AQ9UN37 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
VPS4AQ9UN37 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS4AQ9UN37 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms