Protein–RNA interactions for Protein: Q9H0F5

RNF38, E3 ubiquitin-protein ligase RNF38, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF38Q9H0F5 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC21.81■■□□□ 1.08
RNF38Q9H0F5 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
RNF38Q9H0F5 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC21.81■■□□□ 1.08
RNF38Q9H0F5 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
RNF38Q9H0F5 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC21.8■■□□□ 1.08
RNF38Q9H0F5 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC21.8■■□□□ 1.08
RNF38Q9H0F5 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
RNF38Q9H0F5 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
RNF38Q9H0F5 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
RNF38Q9H0F5 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
RNF38Q9H0F5 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
RNF38Q9H0F5 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
RNF38Q9H0F5 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
RNF38Q9H0F5 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC21.8■■□□□ 1.08
RNF38Q9H0F5 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC21.8■■□□□ 1.08
RNF38Q9H0F5 AL591742.1-201ENST00000604433 565 ntBASIC21.8■■□□□ 1.08
RNF38Q9H0F5 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC21.8■■□□□ 1.08
RNF38Q9H0F5 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
RNF38Q9H0F5 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
RNF38Q9H0F5 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC21.79■■□□□ 1.08
RNF38Q9H0F5 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
RNF38Q9H0F5 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC21.79■■□□□ 1.08
RNF38Q9H0F5 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
RNF38Q9H0F5 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
RNF38Q9H0F5 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
RNF38Q9H0F5 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
RNF38Q9H0F5 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC21.79■■□□□ 1.08
RNF38Q9H0F5 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC21.79■■□□□ 1.08
RNF38Q9H0F5 AC098934.4-201ENST00000564127 592 ntBASIC21.79■■□□□ 1.08
RNF38Q9H0F5 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC21.79■■□□□ 1.08
RNF38Q9H0F5 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC21.79■■□□□ 1.08
RNF38Q9H0F5 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC21.79■■□□□ 1.08
RNF38Q9H0F5 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
RNF38Q9H0F5 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
RNF38Q9H0F5 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC21.79■■□□□ 1.08
RNF38Q9H0F5 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
RNF38Q9H0F5 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
RNF38Q9H0F5 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
RNF38Q9H0F5 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
RNF38Q9H0F5 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
RNF38Q9H0F5 AL512625.2-201ENST00000417533 625 ntBASIC21.78■■□□□ 1.08
RNF38Q9H0F5 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
RNF38Q9H0F5 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC21.78■■□□□ 1.08
RNF38Q9H0F5 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC21.78■■□□□ 1.08
RNF38Q9H0F5 PHB2-213ENST00000546111 858 ntTSL 2 BASIC21.78■■□□□ 1.08
RNF38Q9H0F5 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
RNF38Q9H0F5 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC21.78■■□□□ 1.08
RNF38Q9H0F5 AC069236.1-201ENST00000604339 616 ntBASIC21.78■■□□□ 1.08
RNF38Q9H0F5 MKRN4P-201ENST00000444706 1521 ntBASIC21.78■■□□□ 1.08
RNF38Q9H0F5 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
RNF38Q9H0F5 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC21.78■■□□□ 1.08
RNF38Q9H0F5 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
RNF38Q9H0F5 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
RNF38Q9H0F5 AC133561.1-201ENST00000568600 2415 ntBASIC21.78■■□□□ 1.08
RNF38Q9H0F5 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
RNF38Q9H0F5 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
RNF38Q9H0F5 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
RNF38Q9H0F5 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC21.77■■□□□ 1.08
RNF38Q9H0F5 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
RNF38Q9H0F5 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC21.77■■□□□ 1.08
RNF38Q9H0F5 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC21.77■■□□□ 1.08
RNF38Q9H0F5 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RNF38Q9H0F5 MIPEPP3-201ENST00000412105 444 ntBASIC21.77■■□□□ 1.08
RNF38Q9H0F5 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RNF38Q9H0F5 AC069152.1-201ENST00000438030 544 ntBASIC21.77■■□□□ 1.08
RNF38Q9H0F5 AC008694.1-202ENST00000636953 945 ntBASIC21.77■■□□□ 1.08
RNF38Q9H0F5 LSR-203ENST00000360798 1963 ntTSL 2 BASIC21.77■■□□□ 1.08
RNF38Q9H0F5 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RNF38Q9H0F5 STX5-203ENST00000394690 1568 ntTSL 5 BASIC21.77■■□□□ 1.08
RNF38Q9H0F5 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RNF38Q9H0F5 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
RNF38Q9H0F5 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
RNF38Q9H0F5 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
RNF38Q9H0F5 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC21.76■■□□□ 1.07
RNF38Q9H0F5 ECEL1P1-201ENST00000373592 1742 ntBASIC21.76■■□□□ 1.07
RNF38Q9H0F5 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
RNF38Q9H0F5 AL162412.1-201ENST00000567129 965 ntBASIC21.76■■□□□ 1.07
RNF38Q9H0F5 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC21.76■■□□□ 1.07
RNF38Q9H0F5 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
RNF38Q9H0F5 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC21.76■■□□□ 1.07
RNF38Q9H0F5 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC21.76■■□□□ 1.07
RNF38Q9H0F5 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RNF38Q9H0F5 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
RNF38Q9H0F5 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RNF38Q9H0F5 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
RNF38Q9H0F5 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
RNF38Q9H0F5 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
RNF38Q9H0F5 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
RNF38Q9H0F5 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
RNF38Q9H0F5 AC091799.1-201ENST00000422823 811 ntBASIC21.75■■□□□ 1.07
RNF38Q9H0F5 AC073210.2-201ENST00000430369 194 ntBASIC21.75■■□□□ 1.07
RNF38Q9H0F5 RGMA-211ENST00000557420 989 ntTSL 3 BASIC21.75■■□□□ 1.07
RNF38Q9H0F5 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC21.75■■□□□ 1.07
RNF38Q9H0F5 AC133041.1-202ENST00000642053 222 ntBASIC21.75■■□□□ 1.07
RNF38Q9H0F5 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
RNF38Q9H0F5 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
RNF38Q9H0F5 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
RNF38Q9H0F5 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
RNF38Q9H0F5 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC21.74■■□□□ 1.07
RNF38Q9H0F5 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC21.74■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms