Protein–RNA interactions for Protein: Q9BT23

LIMD2, LIM domain-containing protein 2, humanhuman

Predictions only

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD2Q9BT23 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
LIMD2Q9BT23 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
LIMD2Q9BT23 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC12.42□□□□□ -0.42
LIMD2Q9BT23 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC12.42□□□□□ -0.42
LIMD2Q9BT23 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
LIMD2Q9BT23 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC12.42□□□□□ -0.42
LIMD2Q9BT23 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
LIMD2Q9BT23 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
LIMD2Q9BT23 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
LIMD2Q9BT23 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
LIMD2Q9BT23 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC12.41□□□□□ -0.42
LIMD2Q9BT23 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
LIMD2Q9BT23 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
LIMD2Q9BT23 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
LIMD2Q9BT23 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
LIMD2Q9BT23 AC135279.3-201ENST00000610945 1311 ntBASIC12.41□□□□□ -0.42
LIMD2Q9BT23 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
LIMD2Q9BT23 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC12.41□□□□□ -0.42
LIMD2Q9BT23 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC12.41□□□□□ -0.42
LIMD2Q9BT23 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
LIMD2Q9BT23 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
LIMD2Q9BT23 UNC93B3-201ENST00000308076 687 ntBASIC12.41□□□□□ -0.42
LIMD2Q9BT23 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
LIMD2Q9BT23 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
LIMD2Q9BT23 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
LIMD2Q9BT23 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
LIMD2Q9BT23 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
LIMD2Q9BT23 SLC47A1P1-202ENST00000449666 945 ntBASIC12.41□□□□□ -0.42
LIMD2Q9BT23 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC12.41□□□□□ -0.42
LIMD2Q9BT23 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC12.41□□□□□ -0.42
LIMD2Q9BT23 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
LIMD2Q9BT23 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
LIMD2Q9BT23 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC12.41□□□□□ -0.42
LIMD2Q9BT23 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
LIMD2Q9BT23 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.42
LIMD2Q9BT23 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.42
LIMD2Q9BT23 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
LIMD2Q9BT23 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC12.41□□□□□ -0.42
LIMD2Q9BT23 EML3-217ENST00000531557 2509 ntTSL 5 BASIC12.41□□□□□ -0.42
LIMD2Q9BT23 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
LIMD2Q9BT23 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
LIMD2Q9BT23 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC12.41□□□□□ -0.42
LIMD2Q9BT23 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
LIMD2Q9BT23 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
LIMD2Q9BT23 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
LIMD2Q9BT23 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
LIMD2Q9BT23 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
LIMD2Q9BT23 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
LIMD2Q9BT23 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
LIMD2Q9BT23 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC12.4□□□□□ -0.42
LIMD2Q9BT23 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC12.4□□□□□ -0.42
LIMD2Q9BT23 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
LIMD2Q9BT23 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
LIMD2Q9BT23 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC12.4□□□□□ -0.42
LIMD2Q9BT23 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC12.4□□□□□ -0.42
LIMD2Q9BT23 AC126544.1-201ENST00000580842 1059 ntBASIC12.4□□□□□ -0.42
LIMD2Q9BT23 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC12.4□□□□□ -0.42
LIMD2Q9BT23 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC12.4□□□□□ -0.42
LIMD2Q9BT23 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC12.4□□□□□ -0.42
LIMD2Q9BT23 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC12.4□□□□□ -0.42
LIMD2Q9BT23 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
LIMD2Q9BT23 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC12.4□□□□□ -0.42
LIMD2Q9BT23 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
LIMD2Q9BT23 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC12.4□□□□□ -0.42
LIMD2Q9BT23 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC12.4□□□□□ -0.42
LIMD2Q9BT23 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
LIMD2Q9BT23 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
LIMD2Q9BT23 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC12.4□□□□□ -0.42
LIMD2Q9BT23 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
LIMD2Q9BT23 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
LIMD2Q9BT23 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.43
LIMD2Q9BT23 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
LIMD2Q9BT23 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
LIMD2Q9BT23 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC12.39□□□□□ -0.43
LIMD2Q9BT23 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC12.39□□□□□ -0.43
LIMD2Q9BT23 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
LIMD2Q9BT23 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC12.39□□□□□ -0.43
LIMD2Q9BT23 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
LIMD2Q9BT23 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC12.39□□□□□ -0.43
LIMD2Q9BT23 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC12.39□□□□□ -0.43
LIMD2Q9BT23 SNX3-202ENST00000349379 890 ntTSL 2 BASIC12.39□□□□□ -0.43
LIMD2Q9BT23 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
LIMD2Q9BT23 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
LIMD2Q9BT23 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
LIMD2Q9BT23 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
LIMD2Q9BT23 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC12.39□□□□□ -0.43
LIMD2Q9BT23 AC027682.1-201ENST00000562846 899 ntBASIC12.39□□□□□ -0.43
LIMD2Q9BT23 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
LIMD2Q9BT23 MIR4767-201ENST00000582827 78 ntBASIC12.39□□□□□ -0.43
LIMD2Q9BT23 AC010525.1-201ENST00000585559 441 ntBASIC12.39□□□□□ -0.43
LIMD2Q9BT23 AC233992.3-201ENST00000607491 485 ntBASIC12.39□□□□□ -0.43
LIMD2Q9BT23 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
LIMD2Q9BT23 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
LIMD2Q9BT23 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
LIMD2Q9BT23 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
LIMD2Q9BT23 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
LIMD2Q9BT23 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
LIMD2Q9BT23 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
LIMD2Q9BT23 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
LIMD2Q9BT23 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms