Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
NKX3-1Q99801 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC18.21■□□□□ 0.51
NKX3-1Q99801 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
NKX3-1Q99801 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
NKX3-1Q99801 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC18.21■□□□□ 0.51
NKX3-1Q99801 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC18.21■□□□□ 0.51
NKX3-1Q99801 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
NKX3-1Q99801 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC18.21■□□□□ 0.51
NKX3-1Q99801 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
NKX3-1Q99801 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC18.21■□□□□ 0.51
NKX3-1Q99801 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC18.21■□□□□ 0.51
NKX3-1Q99801 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
NKX3-1Q99801 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC18.21■□□□□ 0.51
NKX3-1Q99801 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
NKX3-1Q99801 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
NKX3-1Q99801 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC18.21■□□□□ 0.51
NKX3-1Q99801 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC18.21■□□□□ 0.51
NKX3-1Q99801 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC18.21■□□□□ 0.51
NKX3-1Q99801 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
NKX3-1Q99801 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
NKX3-1Q99801 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
NKX3-1Q99801 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
NKX3-1Q99801 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC18.2■□□□□ 0.5
NKX3-1Q99801 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
NKX3-1Q99801 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
NKX3-1Q99801 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC18.2■□□□□ 0.5
NKX3-1Q99801 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
NKX3-1Q99801 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
NKX3-1Q99801 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
NKX3-1Q99801 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
NKX3-1Q99801 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
NKX3-1Q99801 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
NKX3-1Q99801 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC18.2■□□□□ 0.5
NKX3-1Q99801 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
NKX3-1Q99801 AL139246.5-201ENST00000606645 996 ntBASIC18.2■□□□□ 0.5
NKX3-1Q99801 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
NKX3-1Q99801 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
NKX3-1Q99801 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC18.2■□□□□ 0.5
NKX3-1Q99801 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
NKX3-1Q99801 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC18.2■□□□□ 0.5
NKX3-1Q99801 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
NKX3-1Q99801 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
NKX3-1Q99801 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC18.2■□□□□ 0.5
NKX3-1Q99801 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
NKX3-1Q99801 PXK-203ENST00000383715 1756 ntTSL 5 BASIC18.19■□□□□ 0.5
NKX3-1Q99801 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
NKX3-1Q99801 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
NKX3-1Q99801 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
NKX3-1Q99801 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC18.19■□□□□ 0.5
NKX3-1Q99801 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
NKX3-1Q99801 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
NKX3-1Q99801 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC18.19■□□□□ 0.5
NKX3-1Q99801 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
NKX3-1Q99801 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
NKX3-1Q99801 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
NKX3-1Q99801 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
NKX3-1Q99801 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
NKX3-1Q99801 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
NKX3-1Q99801 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
NKX3-1Q99801 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
NKX3-1Q99801 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
NKX3-1Q99801 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
NKX3-1Q99801 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC18.19■□□□□ 0.5
NKX3-1Q99801 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
NKX3-1Q99801 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
NKX3-1Q99801 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
NKX3-1Q99801 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
NKX3-1Q99801 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
NKX3-1Q99801 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC18.18■□□□□ 0.5
NKX3-1Q99801 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
NKX3-1Q99801 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
NKX3-1Q99801 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
NKX3-1Q99801 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC18.18■□□□□ 0.5
NKX3-1Q99801 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
NKX3-1Q99801 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC18.18■□□□□ 0.5
NKX3-1Q99801 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
NKX3-1Q99801 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC18.18■□□□□ 0.5
NKX3-1Q99801 AC092171.4-201ENST00000609130 632 ntBASIC18.18■□□□□ 0.5
NKX3-1Q99801 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
NKX3-1Q99801 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
NKX3-1Q99801 AP006587.3-201ENST00000525742 1516 ntBASIC18.18■□□□□ 0.5
NKX3-1Q99801 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
NKX3-1Q99801 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
NKX3-1Q99801 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC18.17■□□□□ 0.5
NKX3-1Q99801 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NKX3-1Q99801 ME2-216ENST00000639850 2331 ntTSL 5 BASIC18.17■□□□□ 0.5
NKX3-1Q99801 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NKX3-1Q99801 PLK5-205ENST00000642079 1969 ntBASIC18.17■□□□□ 0.5
NKX3-1Q99801 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC18.17■□□□□ 0.5
NKX3-1Q99801 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
NKX3-1Q99801 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC18.17■□□□□ 0.5
NKX3-1Q99801 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC18.17■□□□□ 0.5
NKX3-1Q99801 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
NKX3-1Q99801 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC18.17■□□□□ 0.5
NKX3-1Q99801 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC18.17■□□□□ 0.5
NKX3-1Q99801 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NKX3-1Q99801 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC18.17■□□□□ 0.5
NKX3-1Q99801 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC18.17■□□□□ 0.5
NKX3-1Q99801 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
NKX3-1Q99801 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms