Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TIMP4Q99727 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TIMP4Q99727 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TIMP4Q99727 TUB-203ENST00000534099 1759 ntTSL 2 BASIC19.24■□□□□ 0.67
TIMP4Q99727 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TIMP4Q99727 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TIMP4Q99727 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
TIMP4Q99727 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TIMP4Q99727 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TIMP4Q99727 AF106564.1-201ENST00000607058 2553 ntBASIC19.23■□□□□ 0.67
TIMP4Q99727 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
TIMP4Q99727 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TIMP4Q99727 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TIMP4Q99727 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TIMP4Q99727 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
TIMP4Q99727 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC19.23■□□□□ 0.67
TIMP4Q99727 KRT18P11-201ENST00000435214 1283 ntBASIC19.23■□□□□ 0.67
TIMP4Q99727 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TIMP4Q99727 BID-214ENST00000617586 542 ntTSL 5 BASIC19.23■□□□□ 0.67
TIMP4Q99727 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
TIMP4Q99727 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TIMP4Q99727 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
TIMP4Q99727 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
TIMP4Q99727 FEM1AP4-201ENST00000443167 1987 ntBASIC19.23■□□□□ 0.67
TIMP4Q99727 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TIMP4Q99727 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TIMP4Q99727 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
TIMP4Q99727 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC19.22■□□□□ 0.67
TIMP4Q99727 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TIMP4Q99727 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC19.22■□□□□ 0.67
TIMP4Q99727 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
TIMP4Q99727 AP006587.3-201ENST00000525742 1516 ntBASIC19.22■□□□□ 0.67
TIMP4Q99727 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC19.22■□□□□ 0.67
TIMP4Q99727 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
TIMP4Q99727 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
TIMP4Q99727 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TIMP4Q99727 SPI1-203ENST00000533030 661 ntTSL 2 BASIC19.22■□□□□ 0.67
TIMP4Q99727 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
TIMP4Q99727 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC19.22■□□□□ 0.67
TIMP4Q99727 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
TIMP4Q99727 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
TIMP4Q99727 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TIMP4Q99727 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TIMP4Q99727 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC19.22■□□□□ 0.67
TIMP4Q99727 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC19.22■□□□□ 0.67
TIMP4Q99727 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TIMP4Q99727 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC19.22■□□□□ 0.67
TIMP4Q99727 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC19.22■□□□□ 0.67
TIMP4Q99727 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC19.21■□□□□ 0.67
TIMP4Q99727 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TIMP4Q99727 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TIMP4Q99727 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TIMP4Q99727 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TIMP4Q99727 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TIMP4Q99727 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
TIMP4Q99727 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TIMP4Q99727 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TIMP4Q99727 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TIMP4Q99727 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
TIMP4Q99727 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TIMP4Q99727 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC19.2■□□□□ 0.66
TIMP4Q99727 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TIMP4Q99727 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC19.2■□□□□ 0.66
TIMP4Q99727 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC19.2■□□□□ 0.66
TIMP4Q99727 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
TIMP4Q99727 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC19.2■□□□□ 0.66
TIMP4Q99727 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
TIMP4Q99727 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TIMP4Q99727 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC19.2■□□□□ 0.66
TIMP4Q99727 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TIMP4Q99727 CDCA4P2-201ENST00000441182 718 ntBASIC19.2■□□□□ 0.66
TIMP4Q99727 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC19.2■□□□□ 0.66
TIMP4Q99727 SERP1-208ENST00000491660 830 ntTSL 2 BASIC19.2■□□□□ 0.66
TIMP4Q99727 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC19.2■□□□□ 0.66
TIMP4Q99727 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC19.2■□□□□ 0.66
TIMP4Q99727 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
TIMP4Q99727 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
TIMP4Q99727 AP001160.3-201ENST00000601484 763 ntBASIC19.2■□□□□ 0.66
TIMP4Q99727 AC073111.5-205ENST00000641717 521 ntBASIC19.2■□□□□ 0.66
TIMP4Q99727 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
TIMP4Q99727 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
TIMP4Q99727 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TIMP4Q99727 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TIMP4Q99727 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
TIMP4Q99727 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC19.2■□□□□ 0.66
TIMP4Q99727 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TIMP4Q99727 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
TIMP4Q99727 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC19.19■□□□□ 0.66
TIMP4Q99727 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC19.19■□□□□ 0.66
TIMP4Q99727 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC19.19■□□□□ 0.66
TIMP4Q99727 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TIMP4Q99727 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TIMP4Q99727 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC19.19■□□□□ 0.66
TIMP4Q99727 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC19.19■□□□□ 0.66
TIMP4Q99727 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC19.19■□□□□ 0.66
TIMP4Q99727 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC19.19■□□□□ 0.66
TIMP4Q99727 AC011767.1-201ENST00000617410 1153 ntBASIC19.19■□□□□ 0.66
TIMP4Q99727 AC026471.6-201ENST00000622954 1905 ntBASIC19.19■□□□□ 0.66
TIMP4Q99727 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TIMP4Q99727 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 62.3 ms