Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC20.97■□□□□ 0.95
VPS13AQ96RL7 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC20.97■□□□□ 0.95
VPS13AQ96RL7 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS13AQ96RL7 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC20.97■□□□□ 0.95
VPS13AQ96RL7 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
VPS13AQ96RL7 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS13AQ96RL7 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS13AQ96RL7 NME6-213ENST00000451657 871 ntTSL 2 BASIC20.97■□□□□ 0.95
VPS13AQ96RL7 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC20.97■□□□□ 0.95
VPS13AQ96RL7 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC20.97■□□□□ 0.95
VPS13AQ96RL7 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
VPS13AQ96RL7 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
VPS13AQ96RL7 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC20.97■□□□□ 0.95
VPS13AQ96RL7 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC20.97■□□□□ 0.95
VPS13AQ96RL7 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC20.97■□□□□ 0.95
VPS13AQ96RL7 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS13AQ96RL7 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC20.96■□□□□ 0.95
VPS13AQ96RL7 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VPS13AQ96RL7 MTDHP1-201ENST00000605323 784 ntBASIC20.96■□□□□ 0.95
VPS13AQ96RL7 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
VPS13AQ96RL7 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC20.96■□□□□ 0.95
VPS13AQ96RL7 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
VPS13AQ96RL7 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
VPS13AQ96RL7 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
VPS13AQ96RL7 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC20.96■□□□□ 0.95
VPS13AQ96RL7 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC20.96■□□□□ 0.95
VPS13AQ96RL7 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
VPS13AQ96RL7 LINC00526-201ENST00000581067 1875 ntBASIC20.96■□□□□ 0.95
VPS13AQ96RL7 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VPS13AQ96RL7 KRT16P2-201ENST00000414673 1423 ntBASIC20.95■□□□□ 0.95
VPS13AQ96RL7 RBM42-202ENST00000586618 771 ntTSL 3 BASIC20.95■□□□□ 0.94
VPS13AQ96RL7 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC20.95■□□□□ 0.94
VPS13AQ96RL7 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC20.95■□□□□ 0.94
VPS13AQ96RL7 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC20.95■□□□□ 0.94
VPS13AQ96RL7 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC20.95■□□□□ 0.94
VPS13AQ96RL7 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS13AQ96RL7 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
VPS13AQ96RL7 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS13AQ96RL7 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC20.95■□□□□ 0.94
VPS13AQ96RL7 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC20.95■□□□□ 0.94
VPS13AQ96RL7 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC20.95■□□□□ 0.94
VPS13AQ96RL7 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC20.95■□□□□ 0.94
VPS13AQ96RL7 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC20.95■□□□□ 0.94
VPS13AQ96RL7 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS13AQ96RL7 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS13AQ96RL7 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS13AQ96RL7 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
VPS13AQ96RL7 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
VPS13AQ96RL7 LSM12P1-201ENST00000411836 588 ntBASIC20.95■□□□□ 0.94
VPS13AQ96RL7 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC20.95■□□□□ 0.94
VPS13AQ96RL7 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS13AQ96RL7 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
VPS13AQ96RL7 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC20.94■□□□□ 0.94
VPS13AQ96RL7 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
VPS13AQ96RL7 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VPS13AQ96RL7 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC20.94■□□□□ 0.94
VPS13AQ96RL7 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC20.94■□□□□ 0.94
VPS13AQ96RL7 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC20.94■□□□□ 0.94
VPS13AQ96RL7 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC20.94■□□□□ 0.94
VPS13AQ96RL7 RARG-204ENST00000543726 1779 ntTSL 2 BASIC20.94■□□□□ 0.94
VPS13AQ96RL7 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
VPS13AQ96RL7 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VPS13AQ96RL7 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC20.94■□□□□ 0.94
VPS13AQ96RL7 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
VPS13AQ96RL7 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
VPS13AQ96RL7 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC20.94■□□□□ 0.94
VPS13AQ96RL7 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VPS13AQ96RL7 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC20.93■□□□□ 0.94
VPS13AQ96RL7 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC20.93■□□□□ 0.94
VPS13AQ96RL7 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC20.93■□□□□ 0.94
VPS13AQ96RL7 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC20.93■□□□□ 0.94
VPS13AQ96RL7 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC20.93■□□□□ 0.94
VPS13AQ96RL7 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC20.93■□□□□ 0.94
VPS13AQ96RL7 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC20.93■□□□□ 0.94
VPS13AQ96RL7 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC20.93■□□□□ 0.94
VPS13AQ96RL7 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
VPS13AQ96RL7 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC20.93■□□□□ 0.94
VPS13AQ96RL7 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC20.93■□□□□ 0.94
VPS13AQ96RL7 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
VPS13AQ96RL7 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
VPS13AQ96RL7 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
VPS13AQ96RL7 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VPS13AQ96RL7 AL139125.2-201ENST00000623134 1869 ntBASIC20.93■□□□□ 0.94
VPS13AQ96RL7 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
VPS13AQ96RL7 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC20.92■□□□□ 0.94
VPS13AQ96RL7 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC20.92■□□□□ 0.94
VPS13AQ96RL7 AC124016.1-201ENST00000609552 612 ntBASIC20.92■□□□□ 0.94
VPS13AQ96RL7 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
VPS13AQ96RL7 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC20.92■□□□□ 0.94
VPS13AQ96RL7 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
VPS13AQ96RL7 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
VPS13AQ96RL7 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
VPS13AQ96RL7 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
VPS13AQ96RL7 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VPS13AQ96RL7 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC20.91■□□□□ 0.94
VPS13AQ96RL7 TK2-204ENST00000525974 1178 ntTSL 2 BASIC20.91■□□□□ 0.94
VPS13AQ96RL7 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC20.91■□□□□ 0.94
VPS13AQ96RL7 EED-207ENST00000528180 1745 ntTSL 5 BASIC20.91■□□□□ 0.94
VPS13AQ96RL7 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC20.91■□□□□ 0.94
VPS13AQ96RL7 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms