Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC27.83■■■□□ 2.05
USHBP1Q8N6Y0 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC27.83■■■□□ 2.04
USHBP1Q8N6Y0 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC27.82■■■□□ 2.04
USHBP1Q8N6Y0 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC27.82■■■□□ 2.04
USHBP1Q8N6Y0 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC27.82■■■□□ 2.04
USHBP1Q8N6Y0 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
USHBP1Q8N6Y0 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC27.82■■■□□ 2.04
USHBP1Q8N6Y0 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC27.82■■■□□ 2.04
USHBP1Q8N6Y0 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC27.82■■■□□ 2.04
USHBP1Q8N6Y0 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC27.82■■■□□ 2.04
USHBP1Q8N6Y0 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC27.82■■■□□ 2.04
USHBP1Q8N6Y0 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC27.82■■■□□ 2.04
USHBP1Q8N6Y0 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC27.82■■■□□ 2.04
USHBP1Q8N6Y0 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
USHBP1Q8N6Y0 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC27.81■■■□□ 2.04
USHBP1Q8N6Y0 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
USHBP1Q8N6Y0 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
USHBP1Q8N6Y0 SERPINH1P1-201ENST00000419794 1249 ntBASIC27.81■■■□□ 2.04
USHBP1Q8N6Y0 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC27.81■■■□□ 2.04
USHBP1Q8N6Y0 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC27.81■■■□□ 2.04
USHBP1Q8N6Y0 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
USHBP1Q8N6Y0 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC27.81■■■□□ 2.04
USHBP1Q8N6Y0 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
USHBP1Q8N6Y0 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC27.81■■■□□ 2.04
USHBP1Q8N6Y0 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC27.8■■■□□ 2.04
USHBP1Q8N6Y0 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC27.8■■■□□ 2.04
USHBP1Q8N6Y0 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
USHBP1Q8N6Y0 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC27.8■■■□□ 2.04
USHBP1Q8N6Y0 LSM12P1-201ENST00000411836 588 ntBASIC27.8■■■□□ 2.04
USHBP1Q8N6Y0 GCSHP5-201ENST00000443090 522 ntBASIC27.8■■■□□ 2.04
USHBP1Q8N6Y0 AC128676.1-201ENST00000454392 318 ntBASIC27.8■■■□□ 2.04
USHBP1Q8N6Y0 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC27.8■■■□□ 2.04
USHBP1Q8N6Y0 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC27.8■■■□□ 2.04
USHBP1Q8N6Y0 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
USHBP1Q8N6Y0 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC27.79■■■□□ 2.04
USHBP1Q8N6Y0 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
USHBP1Q8N6Y0 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC27.79■■■□□ 2.04
USHBP1Q8N6Y0 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC27.79■■■□□ 2.04
USHBP1Q8N6Y0 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
USHBP1Q8N6Y0 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC27.79■■■□□ 2.04
USHBP1Q8N6Y0 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC27.79■■■□□ 2.04
USHBP1Q8N6Y0 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC27.79■■■□□ 2.04
USHBP1Q8N6Y0 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC27.79■■■□□ 2.04
USHBP1Q8N6Y0 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
USHBP1Q8N6Y0 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC27.79■■■□□ 2.04
USHBP1Q8N6Y0 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC27.79■■■□□ 2.04
USHBP1Q8N6Y0 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC27.79■■■□□ 2.04
USHBP1Q8N6Y0 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC27.79■■■□□ 2.04
USHBP1Q8N6Y0 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
USHBP1Q8N6Y0 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC27.78■■■□□ 2.04
USHBP1Q8N6Y0 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC27.78■■■□□ 2.04
USHBP1Q8N6Y0 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC27.78■■■□□ 2.04
USHBP1Q8N6Y0 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
USHBP1Q8N6Y0 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC27.78■■■□□ 2.04
USHBP1Q8N6Y0 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC27.78■■■□□ 2.04
USHBP1Q8N6Y0 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
USHBP1Q8N6Y0 AC068473.5-201ENST00000616428 2072 ntBASIC27.78■■■□□ 2.04
USHBP1Q8N6Y0 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
USHBP1Q8N6Y0 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC27.78■■■□□ 2.04
USHBP1Q8N6Y0 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
USHBP1Q8N6Y0 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC27.77■■■□□ 2.04
USHBP1Q8N6Y0 FAM99A-202ENST00000538190 1989 ntBASIC27.77■■■□□ 2.04
USHBP1Q8N6Y0 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC27.77■■■□□ 2.04
USHBP1Q8N6Y0 AL158047.1-201ENST00000445918 881 ntBASIC27.77■■■□□ 2.04
USHBP1Q8N6Y0 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC27.77■■■□□ 2.04
USHBP1Q8N6Y0 AC127496.7-201ENST00000625110 1798 ntBASIC27.77■■■□□ 2.04
USHBP1Q8N6Y0 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
USHBP1Q8N6Y0 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC27.76■■■□□ 2.04
USHBP1Q8N6Y0 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.04
USHBP1Q8N6Y0 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.04
USHBP1Q8N6Y0 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.04
USHBP1Q8N6Y0 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.04
USHBP1Q8N6Y0 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.04
USHBP1Q8N6Y0 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.04
USHBP1Q8N6Y0 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC27.76■■■□□ 2.03
USHBP1Q8N6Y0 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC27.76■■■□□ 2.03
USHBP1Q8N6Y0 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
USHBP1Q8N6Y0 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
USHBP1Q8N6Y0 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC27.76■■■□□ 2.03
USHBP1Q8N6Y0 GATS-209ENST00000454084 1030 ntTSL 3 BASIC27.76■■■□□ 2.03
USHBP1Q8N6Y0 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC27.76■■■□□ 2.03
USHBP1Q8N6Y0 UNC93B5-201ENST00000530315 699 ntBASIC27.76■■■□□ 2.03
USHBP1Q8N6Y0 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC27.76■■■□□ 2.03
USHBP1Q8N6Y0 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC27.76■■■□□ 2.03
USHBP1Q8N6Y0 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC27.76■■■□□ 2.03
USHBP1Q8N6Y0 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
USHBP1Q8N6Y0 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
USHBP1Q8N6Y0 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC27.76■■■□□ 2.03
USHBP1Q8N6Y0 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
USHBP1Q8N6Y0 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC27.75■■■□□ 2.03
USHBP1Q8N6Y0 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
USHBP1Q8N6Y0 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
USHBP1Q8N6Y0 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC27.75■■■□□ 2.03
USHBP1Q8N6Y0 CASP6-205ENST00000505486 538 ntTSL 4 BASIC27.75■■■□□ 2.03
USHBP1Q8N6Y0 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC27.75■■■□□ 2.03
USHBP1Q8N6Y0 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC27.75■■■□□ 2.03
USHBP1Q8N6Y0 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC27.74■■■□□ 2.03
USHBP1Q8N6Y0 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
USHBP1Q8N6Y0 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
USHBP1Q8N6Y0 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms