Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC23.26■■□□□ 1.31
CCDC65Q8IXS2 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC23.26■■□□□ 1.31
CCDC65Q8IXS2 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
CCDC65Q8IXS2 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
CCDC65Q8IXS2 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC23.26■■□□□ 1.31
CCDC65Q8IXS2 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC23.26■■□□□ 1.31
CCDC65Q8IXS2 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC23.26■■□□□ 1.31
CCDC65Q8IXS2 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC23.26■■□□□ 1.31
CCDC65Q8IXS2 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC23.26■■□□□ 1.31
CCDC65Q8IXS2 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC23.26■■□□□ 1.31
CCDC65Q8IXS2 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC23.26■■□□□ 1.31
CCDC65Q8IXS2 AC061975.6-201ENST00000579045 1553 ntBASIC23.26■■□□□ 1.31
CCDC65Q8IXS2 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC23.26■■□□□ 1.31
CCDC65Q8IXS2 PALM-207ENST00000590161 2137 ntTSL 4 BASIC23.26■■□□□ 1.31
CCDC65Q8IXS2 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CCDC65Q8IXS2 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CCDC65Q8IXS2 POU5F1P4-201ENST00000413175 1085 ntBASIC23.25■■□□□ 1.31
CCDC65Q8IXS2 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CCDC65Q8IXS2 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CCDC65Q8IXS2 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC23.25■■□□□ 1.31
CCDC65Q8IXS2 AC104187.1-201ENST00000607510 612 ntBASIC23.25■■□□□ 1.31
CCDC65Q8IXS2 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CCDC65Q8IXS2 AC019069.1-201ENST00000610008 1333 ntBASIC23.25■■□□□ 1.31
CCDC65Q8IXS2 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC23.25■■□□□ 1.31
CCDC65Q8IXS2 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC23.25■■□□□ 1.31
CCDC65Q8IXS2 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
CCDC65Q8IXS2 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CCDC65Q8IXS2 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC23.25■■□□□ 1.31
CCDC65Q8IXS2 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
CCDC65Q8IXS2 AP004607.4-201ENST00000530158 1459 ntBASIC23.24■■□□□ 1.31
CCDC65Q8IXS2 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC23.24■■□□□ 1.31
CCDC65Q8IXS2 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC23.24■■□□□ 1.31
CCDC65Q8IXS2 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC23.24■■□□□ 1.31
CCDC65Q8IXS2 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC23.24■■□□□ 1.31
CCDC65Q8IXS2 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC23.24■■□□□ 1.31
CCDC65Q8IXS2 AC097381.1-201ENST00000429019 1296 ntBASIC23.24■■□□□ 1.31
CCDC65Q8IXS2 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC23.24■■□□□ 1.31
CCDC65Q8IXS2 TESC-206ENST00000541210 936 ntTSL 3 BASIC23.24■■□□□ 1.31
CCDC65Q8IXS2 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
CCDC65Q8IXS2 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CCDC65Q8IXS2 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC23.24■■□□□ 1.31
CCDC65Q8IXS2 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
CCDC65Q8IXS2 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC23.24■■□□□ 1.31
CCDC65Q8IXS2 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CCDC65Q8IXS2 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
CCDC65Q8IXS2 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC23.23■■□□□ 1.31
CCDC65Q8IXS2 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CCDC65Q8IXS2 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
CCDC65Q8IXS2 AC010141.2-201ENST00000452426 721 ntBASIC23.23■■□□□ 1.31
CCDC65Q8IXS2 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC23.23■■□□□ 1.31
CCDC65Q8IXS2 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC23.23■■□□□ 1.31
CCDC65Q8IXS2 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC23.23■■□□□ 1.31
CCDC65Q8IXS2 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CCDC65Q8IXS2 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC23.23■■□□□ 1.31
CCDC65Q8IXS2 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC23.23■■□□□ 1.31
CCDC65Q8IXS2 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC23.23■■□□□ 1.31
CCDC65Q8IXS2 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CCDC65Q8IXS2 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CCDC65Q8IXS2 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CCDC65Q8IXS2 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC23.22■■□□□ 1.31
CCDC65Q8IXS2 DUX4L2-201ENST00000561772 1275 ntBASIC23.22■■□□□ 1.31
CCDC65Q8IXS2 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC23.22■■□□□ 1.31
CCDC65Q8IXS2 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC23.22■■□□□ 1.31
CCDC65Q8IXS2 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC23.22■■□□□ 1.31
CCDC65Q8IXS2 MIR6821-201ENST00000617625 74 ntBASIC23.22■■□□□ 1.31
CCDC65Q8IXS2 DUX4L6-201ENST00000626483 1275 ntBASIC23.22■■□□□ 1.31
CCDC65Q8IXS2 DUX4L1-201ENST00000627662 1275 ntBASIC23.22■■□□□ 1.31
CCDC65Q8IXS2 DUX4L8-201ENST00000629013 1275 ntBASIC23.22■■□□□ 1.31
CCDC65Q8IXS2 DUX4L3-201ENST00000630187 1275 ntBASIC23.22■■□□□ 1.31
CCDC65Q8IXS2 DUX4L7-201ENST00000630678 1275 ntBASIC23.22■■□□□ 1.31
CCDC65Q8IXS2 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
CCDC65Q8IXS2 DUX4L5-201ENST00000630834 1275 ntBASIC23.22■■□□□ 1.31
CCDC65Q8IXS2 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CCDC65Q8IXS2 AC004854.2-201ENST00000608450 1441 ntBASIC23.22■■□□□ 1.31
CCDC65Q8IXS2 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CCDC65Q8IXS2 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CCDC65Q8IXS2 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CCDC65Q8IXS2 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC23.21■■□□□ 1.31
CCDC65Q8IXS2 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC23.21■■□□□ 1.31
CCDC65Q8IXS2 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
CCDC65Q8IXS2 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC23.21■■□□□ 1.31
CCDC65Q8IXS2 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC23.21■■□□□ 1.31
CCDC65Q8IXS2 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CCDC65Q8IXS2 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC23.21■■□□□ 1.31
CCDC65Q8IXS2 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC23.21■■□□□ 1.31
CCDC65Q8IXS2 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
CCDC65Q8IXS2 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC23.2■■□□□ 1.31
CCDC65Q8IXS2 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
CCDC65Q8IXS2 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC23.2■■□□□ 1.3
CCDC65Q8IXS2 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC23.2■■□□□ 1.3
CCDC65Q8IXS2 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC23.2■■□□□ 1.3
CCDC65Q8IXS2 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC23.2■■□□□ 1.3
CCDC65Q8IXS2 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CCDC65Q8IXS2 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC23.2■■□□□ 1.3
CCDC65Q8IXS2 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CCDC65Q8IXS2 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
CCDC65Q8IXS2 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC23.2■■□□□ 1.3
CCDC65Q8IXS2 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CCDC65Q8IXS2 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CCDC65Q8IXS2 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC23.2■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms