Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC25.69■■□□□ 1.7
USP48Q86UV5 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
USP48Q86UV5 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC25.69■■□□□ 1.7
USP48Q86UV5 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC25.69■■□□□ 1.7
USP48Q86UV5 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
USP48Q86UV5 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC25.69■■□□□ 1.7
USP48Q86UV5 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC25.69■■□□□ 1.7
USP48Q86UV5 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
USP48Q86UV5 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
USP48Q86UV5 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
USP48Q86UV5 AL137060.1-201ENST00000618151 2648 ntBASIC25.68■■□□□ 1.7
USP48Q86UV5 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC25.68■■□□□ 1.7
USP48Q86UV5 AC080038.3-201ENST00000623346 1952 ntBASIC25.68■■□□□ 1.7
USP48Q86UV5 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC25.68■■□□□ 1.7
USP48Q86UV5 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC25.68■■□□□ 1.7
USP48Q86UV5 AL158047.1-201ENST00000445918 881 ntBASIC25.68■■□□□ 1.7
USP48Q86UV5 AC093787.1-201ENST00000450396 207 ntBASIC25.68■■□□□ 1.7
USP48Q86UV5 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
USP48Q86UV5 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
USP48Q86UV5 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
USP48Q86UV5 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC25.67■■□□□ 1.7
USP48Q86UV5 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC25.67■■□□□ 1.7
USP48Q86UV5 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
USP48Q86UV5 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC25.67■■□□□ 1.7
USP48Q86UV5 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC25.67■■□□□ 1.7
USP48Q86UV5 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
USP48Q86UV5 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC25.67■■□□□ 1.7
USP48Q86UV5 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC25.67■■□□□ 1.7
USP48Q86UV5 ADM-205ENST00000528544 586 ntTSL 2 BASIC25.67■■□□□ 1.7
USP48Q86UV5 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC25.67■■□□□ 1.7
USP48Q86UV5 AC092118.2-201ENST00000613495 667 ntBASIC25.67■■□□□ 1.7
USP48Q86UV5 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC25.67■■□□□ 1.7
USP48Q86UV5 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC25.67■■□□□ 1.7
USP48Q86UV5 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
USP48Q86UV5 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
USP48Q86UV5 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC25.67■■□□□ 1.7
USP48Q86UV5 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
USP48Q86UV5 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
USP48Q86UV5 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC25.66■■□□□ 1.7
USP48Q86UV5 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC25.66■■□□□ 1.7
USP48Q86UV5 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
USP48Q86UV5 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC25.66■■□□□ 1.7
USP48Q86UV5 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC25.66■■□□□ 1.7
USP48Q86UV5 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
USP48Q86UV5 AC092053.2-201ENST00000640557 1818 ntBASIC25.66■■□□□ 1.7
USP48Q86UV5 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC25.66■■□□□ 1.7
USP48Q86UV5 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC25.66■■□□□ 1.7
USP48Q86UV5 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
USP48Q86UV5 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC25.66■■□□□ 1.7
USP48Q86UV5 BET1L-204ENST00000410108 637 ntTSL 3 BASIC25.66■■□□□ 1.7
USP48Q86UV5 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC25.66■■□□□ 1.7
USP48Q86UV5 CASP6-205ENST00000505486 538 ntTSL 4 BASIC25.66■■□□□ 1.7
USP48Q86UV5 IRX5-204ENST00000560154 879 ntTSL 5 BASIC25.66■■□□□ 1.7
USP48Q86UV5 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
USP48Q86UV5 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC25.66■■□□□ 1.7
USP48Q86UV5 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC25.66■■□□□ 1.7
USP48Q86UV5 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
USP48Q86UV5 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC25.66■■□□□ 1.7
USP48Q86UV5 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC25.66■■□□□ 1.7
USP48Q86UV5 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC25.65■■□□□ 1.7
USP48Q86UV5 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC25.65■■□□□ 1.7
USP48Q86UV5 C11orf96-202ENST00000528572 1834 ntBASIC25.65■■□□□ 1.7
USP48Q86UV5 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC25.65■■□□□ 1.7
USP48Q86UV5 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
USP48Q86UV5 AC083880.1-201ENST00000608266 535 ntBASIC25.65■■□□□ 1.7
USP48Q86UV5 OR10C1-204ENST00000622521 1039 ntBASIC25.65■■□□□ 1.7
USP48Q86UV5 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
USP48Q86UV5 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC25.65■■□□□ 1.7
USP48Q86UV5 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
USP48Q86UV5 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
USP48Q86UV5 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC25.64■■□□□ 1.7
USP48Q86UV5 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
USP48Q86UV5 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
USP48Q86UV5 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
USP48Q86UV5 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC25.64■■□□□ 1.7
USP48Q86UV5 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC25.64■■□□□ 1.7
USP48Q86UV5 RPS2P4-201ENST00000476944 856 ntBASIC25.64■■□□□ 1.7
USP48Q86UV5 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
USP48Q86UV5 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC25.64■■□□□ 1.7
USP48Q86UV5 AC142381.4-202ENST00000563973 229 ntBASIC25.64■■□□□ 1.7
USP48Q86UV5 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC25.64■■□□□ 1.7
USP48Q86UV5 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC25.64■■□□□ 1.7
USP48Q86UV5 AC016405.3-201ENST00000607710 860 ntBASIC25.64■■□□□ 1.7
USP48Q86UV5 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC25.64■■□□□ 1.7
USP48Q86UV5 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
USP48Q86UV5 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC25.63■■□□□ 1.69
USP48Q86UV5 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
USP48Q86UV5 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC25.63■■□□□ 1.69
USP48Q86UV5 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC25.63■■□□□ 1.69
USP48Q86UV5 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC25.63■■□□□ 1.69
USP48Q86UV5 BX276092.2-201ENST00000417668 665 ntBASIC25.63■■□□□ 1.69
USP48Q86UV5 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC25.63■■□□□ 1.69
USP48Q86UV5 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC25.63■■□□□ 1.69
USP48Q86UV5 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC25.63■■□□□ 1.69
USP48Q86UV5 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
USP48Q86UV5 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC25.63■■□□□ 1.69
USP48Q86UV5 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC25.63■■□□□ 1.69
USP48Q86UV5 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
USP48Q86UV5 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC25.62■■□□□ 1.69
USP48Q86UV5 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms