Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
NUP54Q7Z3B4 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
NUP54Q7Z3B4 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
NUP54Q7Z3B4 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
NUP54Q7Z3B4 STX7-201ENST00000367937 1090 ntTSL 5 BASIC19.38■□□□□ 0.69
NUP54Q7Z3B4 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
NUP54Q7Z3B4 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
NUP54Q7Z3B4 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC19.38■□□□□ 0.69
NUP54Q7Z3B4 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
NUP54Q7Z3B4 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC19.38■□□□□ 0.69
NUP54Q7Z3B4 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC19.38■□□□□ 0.69
NUP54Q7Z3B4 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
NUP54Q7Z3B4 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC19.38■□□□□ 0.69
NUP54Q7Z3B4 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
NUP54Q7Z3B4 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
NUP54Q7Z3B4 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.38■□□□□ 0.69
NUP54Q7Z3B4 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
NUP54Q7Z3B4 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
NUP54Q7Z3B4 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
NUP54Q7Z3B4 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
NUP54Q7Z3B4 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC19.37■□□□□ 0.69
NUP54Q7Z3B4 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC19.37■□□□□ 0.69
NUP54Q7Z3B4 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
NUP54Q7Z3B4 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
NUP54Q7Z3B4 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
NUP54Q7Z3B4 AC016769.1-201ENST00000409132 1010 ntBASIC19.37■□□□□ 0.69
NUP54Q7Z3B4 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
NUP54Q7Z3B4 KRT18P11-201ENST00000435214 1283 ntBASIC19.37■□□□□ 0.69
NUP54Q7Z3B4 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
NUP54Q7Z3B4 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC19.37■□□□□ 0.69
NUP54Q7Z3B4 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC19.37■□□□□ 0.69
NUP54Q7Z3B4 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC19.37■□□□□ 0.69
NUP54Q7Z3B4 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC19.37■□□□□ 0.69
NUP54Q7Z3B4 AC120498.10-201ENST00000621827 505 ntBASIC19.37■□□□□ 0.69
NUP54Q7Z3B4 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
NUP54Q7Z3B4 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.37■□□□□ 0.69
NUP54Q7Z3B4 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
NUP54Q7Z3B4 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
NUP54Q7Z3B4 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC19.36■□□□□ 0.69
NUP54Q7Z3B4 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
NUP54Q7Z3B4 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
NUP54Q7Z3B4 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
NUP54Q7Z3B4 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC19.36■□□□□ 0.69
NUP54Q7Z3B4 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
NUP54Q7Z3B4 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
NUP54Q7Z3B4 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC19.36■□□□□ 0.69
NUP54Q7Z3B4 HSCB-202ENST00000398941 955 ntTSL 2 BASIC19.36■□□□□ 0.69
NUP54Q7Z3B4 AC092666.2-201ENST00000613287 246 ntBASIC19.36■□□□□ 0.69
NUP54Q7Z3B4 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
NUP54Q7Z3B4 ME2-206ENST00000638410 2289 ntTSL 5 BASIC19.36■□□□□ 0.69
NUP54Q7Z3B4 ME2-210ENST00000639255 2262 ntTSL 5 BASIC19.36■□□□□ 0.69
NUP54Q7Z3B4 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
NUP54Q7Z3B4 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
NUP54Q7Z3B4 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
NUP54Q7Z3B4 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
NUP54Q7Z3B4 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
NUP54Q7Z3B4 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC19.35■□□□□ 0.69
NUP54Q7Z3B4 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
NUP54Q7Z3B4 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
NUP54Q7Z3B4 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
NUP54Q7Z3B4 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
NUP54Q7Z3B4 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC19.35■□□□□ 0.69
NUP54Q7Z3B4 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
NUP54Q7Z3B4 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
NUP54Q7Z3B4 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
NUP54Q7Z3B4 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC19.35■□□□□ 0.69
NUP54Q7Z3B4 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC19.35■□□□□ 0.69
NUP54Q7Z3B4 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
NUP54Q7Z3B4 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC19.35■□□□□ 0.69
NUP54Q7Z3B4 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC19.35■□□□□ 0.69
NUP54Q7Z3B4 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
NUP54Q7Z3B4 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
NUP54Q7Z3B4 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
NUP54Q7Z3B4 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
NUP54Q7Z3B4 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC19.35■□□□□ 0.69
NUP54Q7Z3B4 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
NUP54Q7Z3B4 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
NUP54Q7Z3B4 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
NUP54Q7Z3B4 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
NUP54Q7Z3B4 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
NUP54Q7Z3B4 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
NUP54Q7Z3B4 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC19.34■□□□□ 0.69
NUP54Q7Z3B4 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
NUP54Q7Z3B4 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
NUP54Q7Z3B4 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
NUP54Q7Z3B4 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
NUP54Q7Z3B4 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC19.34■□□□□ 0.69
NUP54Q7Z3B4 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
NUP54Q7Z3B4 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
NUP54Q7Z3B4 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
NUP54Q7Z3B4 NAA20-201ENST00000310450 920 ntTSL 2 BASIC19.34■□□□□ 0.69
NUP54Q7Z3B4 ME3-201ENST00000323418 1068 ntTSL 5 BASIC19.34■□□□□ 0.69
NUP54Q7Z3B4 AC006015.1-201ENST00000429970 570 ntBASIC19.34■□□□□ 0.69
NUP54Q7Z3B4 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
NUP54Q7Z3B4 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
NUP54Q7Z3B4 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
NUP54Q7Z3B4 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC19.34■□□□□ 0.69
NUP54Q7Z3B4 NARF-205ENST00000412079 1760 ntTSL 5 BASIC19.34■□□□□ 0.69
NUP54Q7Z3B4 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC19.34■□□□□ 0.69
NUP54Q7Z3B4 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms