Protein–RNA interactions for Protein: Q6ZNA4

RNF111, E3 ubiquitin-protein ligase Arkadia, humanhuman

Predictions only

Length 994 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF111Q6ZNA4 AC010141.3-201ENST00000456659 717 ntBASIC20.31■□□□□ 0.84
RNF111Q6ZNA4 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
RNF111Q6ZNA4 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
RNF111Q6ZNA4 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
RNF111Q6ZNA4 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
RNF111Q6ZNA4 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.3■□□□□ 0.84
RNF111Q6ZNA4 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
RNF111Q6ZNA4 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
RNF111Q6ZNA4 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RNF111Q6ZNA4 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
RNF111Q6ZNA4 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
RNF111Q6ZNA4 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
RNF111Q6ZNA4 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
RNF111Q6ZNA4 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RNF111Q6ZNA4 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC20.3■□□□□ 0.84
RNF111Q6ZNA4 AC105265.2-201ENST00000467189 838 ntBASIC20.3■□□□□ 0.84
RNF111Q6ZNA4 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
RNF111Q6ZNA4 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC20.3■□□□□ 0.84
RNF111Q6ZNA4 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC20.3■□□□□ 0.84
RNF111Q6ZNA4 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC20.3■□□□□ 0.84
RNF111Q6ZNA4 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RNF111Q6ZNA4 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC20.3■□□□□ 0.84
RNF111Q6ZNA4 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RNF111Q6ZNA4 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC20.29■□□□□ 0.84
RNF111Q6ZNA4 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC20.29■□□□□ 0.84
RNF111Q6ZNA4 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC20.29■□□□□ 0.84
RNF111Q6ZNA4 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC20.29■□□□□ 0.84
RNF111Q6ZNA4 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RNF111Q6ZNA4 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RNF111Q6ZNA4 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RNF111Q6ZNA4 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RNF111Q6ZNA4 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
RNF111Q6ZNA4 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC20.29■□□□□ 0.84
RNF111Q6ZNA4 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC20.29■□□□□ 0.84
RNF111Q6ZNA4 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
RNF111Q6ZNA4 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RNF111Q6ZNA4 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
RNF111Q6ZNA4 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC20.29■□□□□ 0.84
RNF111Q6ZNA4 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RNF111Q6ZNA4 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RNF111Q6ZNA4 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC20.29■□□□□ 0.84
RNF111Q6ZNA4 AC019069.1-201ENST00000610008 1333 ntBASIC20.28■□□□□ 0.84
RNF111Q6ZNA4 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RNF111Q6ZNA4 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
RNF111Q6ZNA4 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC20.28■□□□□ 0.84
RNF111Q6ZNA4 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RNF111Q6ZNA4 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RNF111Q6ZNA4 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC20.28■□□□□ 0.84
RNF111Q6ZNA4 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RNF111Q6ZNA4 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
RNF111Q6ZNA4 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RNF111Q6ZNA4 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC20.28■□□□□ 0.84
RNF111Q6ZNA4 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
RNF111Q6ZNA4 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC20.28■□□□□ 0.84
RNF111Q6ZNA4 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RNF111Q6ZNA4 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.28■□□□□ 0.84
RNF111Q6ZNA4 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC20.28■□□□□ 0.84
RNF111Q6ZNA4 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC20.28■□□□□ 0.84
RNF111Q6ZNA4 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC20.28■□□□□ 0.84
RNF111Q6ZNA4 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
RNF111Q6ZNA4 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RNF111Q6ZNA4 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RNF111Q6ZNA4 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC20.27■□□□□ 0.84
RNF111Q6ZNA4 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RNF111Q6ZNA4 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
RNF111Q6ZNA4 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
RNF111Q6ZNA4 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RNF111Q6ZNA4 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC20.27■□□□□ 0.84
RNF111Q6ZNA4 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC20.27■□□□□ 0.84
RNF111Q6ZNA4 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC20.27■□□□□ 0.84
RNF111Q6ZNA4 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC20.27■□□□□ 0.84
RNF111Q6ZNA4 STOX2-205ENST00000513034 807 ntTSL 3 BASIC20.27■□□□□ 0.84
RNF111Q6ZNA4 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
RNF111Q6ZNA4 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RNF111Q6ZNA4 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
RNF111Q6ZNA4 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
RNF111Q6ZNA4 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
RNF111Q6ZNA4 PCDHAC2-203ENST00000615316 3011 ntBASIC20.27■□□□□ 0.83
RNF111Q6ZNA4 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC20.26■□□□□ 0.83
RNF111Q6ZNA4 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
RNF111Q6ZNA4 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC20.26■□□□□ 0.83
RNF111Q6ZNA4 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC20.26■□□□□ 0.83
RNF111Q6ZNA4 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC20.26■□□□□ 0.83
RNF111Q6ZNA4 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.26■□□□□ 0.83
RNF111Q6ZNA4 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
RNF111Q6ZNA4 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC20.26■□□□□ 0.83
RNF111Q6ZNA4 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC20.26■□□□□ 0.83
RNF111Q6ZNA4 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC20.26■□□□□ 0.83
RNF111Q6ZNA4 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RNF111Q6ZNA4 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
RNF111Q6ZNA4 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC20.26■□□□□ 0.83
RNF111Q6ZNA4 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RNF111Q6ZNA4 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RNF111Q6ZNA4 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
RNF111Q6ZNA4 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RNF111Q6ZNA4 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
RNF111Q6ZNA4 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC20.25■□□□□ 0.83
RNF111Q6ZNA4 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
RNF111Q6ZNA4 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
RNF111Q6ZNA4 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 54.1 ms