Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
KRT40Q6A162 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
KRT40Q6A162 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC24.29■■□□□ 1.48
KRT40Q6A162 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
KRT40Q6A162 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
KRT40Q6A162 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC24.29■■□□□ 1.48
KRT40Q6A162 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
KRT40Q6A162 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
KRT40Q6A162 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
KRT40Q6A162 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
KRT40Q6A162 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
KRT40Q6A162 PARN-205ENST00000539279 1557 ntTSL 2 BASIC24.29■■□□□ 1.48
KRT40Q6A162 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC24.28■■□□□ 1.48
KRT40Q6A162 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
KRT40Q6A162 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
KRT40Q6A162 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC24.28■■□□□ 1.48
KRT40Q6A162 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
KRT40Q6A162 TK2-208ENST00000545043 1120 ntTSL 2 BASIC24.28■■□□□ 1.48
KRT40Q6A162 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC24.28■■□□□ 1.48
KRT40Q6A162 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
KRT40Q6A162 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
KRT40Q6A162 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
KRT40Q6A162 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
KRT40Q6A162 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
KRT40Q6A162 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
KRT40Q6A162 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
KRT40Q6A162 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC24.27■■□□□ 1.48
KRT40Q6A162 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC24.27■■□□□ 1.48
KRT40Q6A162 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC24.27■■□□□ 1.48
KRT40Q6A162 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
KRT40Q6A162 AC079140.4-201ENST00000507448 529 ntBASIC24.27■■□□□ 1.48
KRT40Q6A162 AC053503.5-201ENST00000601508 636 ntBASIC24.27■■□□□ 1.48
KRT40Q6A162 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC24.27■■□□□ 1.48
KRT40Q6A162 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
KRT40Q6A162 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
KRT40Q6A162 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
KRT40Q6A162 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
KRT40Q6A162 LINC02228-203ENST00000641970 1355 ntBASIC24.27■■□□□ 1.48
KRT40Q6A162 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC24.26■■□□□ 1.47
KRT40Q6A162 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
KRT40Q6A162 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
KRT40Q6A162 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
KRT40Q6A162 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
KRT40Q6A162 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC24.26■■□□□ 1.47
KRT40Q6A162 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
KRT40Q6A162 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
KRT40Q6A162 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC24.26■■□□□ 1.47
KRT40Q6A162 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC24.26■■□□□ 1.47
KRT40Q6A162 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC24.26■■□□□ 1.47
KRT40Q6A162 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC24.26■■□□□ 1.47
KRT40Q6A162 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
KRT40Q6A162 AL049796.1-201ENST00000565336 1766 ntBASIC24.26■■□□□ 1.47
KRT40Q6A162 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
KRT40Q6A162 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
KRT40Q6A162 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
KRT40Q6A162 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC24.26■■□□□ 1.47
KRT40Q6A162 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
KRT40Q6A162 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC24.25■■□□□ 1.47
KRT40Q6A162 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
KRT40Q6A162 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
KRT40Q6A162 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
KRT40Q6A162 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC24.25■■□□□ 1.47
KRT40Q6A162 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
KRT40Q6A162 ABHD17AP1-201ENST00000358206 933 ntBASIC24.25■■□□□ 1.47
KRT40Q6A162 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC24.25■■□□□ 1.47
KRT40Q6A162 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
KRT40Q6A162 KRT18P14-201ENST00000534205 1250 ntBASIC24.25■■□□□ 1.47
KRT40Q6A162 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC24.25■■□□□ 1.47
KRT40Q6A162 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
KRT40Q6A162 GXYLT1P5-201ENST00000614548 1189 ntBASIC24.25■■□□□ 1.47
KRT40Q6A162 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
KRT40Q6A162 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
KRT40Q6A162 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC24.25■■□□□ 1.47
KRT40Q6A162 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
KRT40Q6A162 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC24.25■■□□□ 1.47
KRT40Q6A162 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC24.24■■□□□ 1.47
KRT40Q6A162 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC24.24■■□□□ 1.47
KRT40Q6A162 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
KRT40Q6A162 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC24.24■■□□□ 1.47
KRT40Q6A162 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
KRT40Q6A162 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
KRT40Q6A162 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC24.24■■□□□ 1.47
KRT40Q6A162 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC24.24■■□□□ 1.47
KRT40Q6A162 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC24.24■■□□□ 1.47
KRT40Q6A162 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC24.23■■□□□ 1.47
KRT40Q6A162 TERF1P2-201ENST00000583350 1212 ntBASIC24.23■■□□□ 1.47
KRT40Q6A162 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC24.23■■□□□ 1.47
KRT40Q6A162 KRT87P-202ENST00000534226 1464 ntBASIC24.23■■□□□ 1.47
KRT40Q6A162 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
KRT40Q6A162 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
KRT40Q6A162 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
KRT40Q6A162 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
KRT40Q6A162 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC24.23■■□□□ 1.47
KRT40Q6A162 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC24.23■■□□□ 1.47
KRT40Q6A162 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
KRT40Q6A162 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
KRT40Q6A162 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
KRT40Q6A162 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC24.22■■□□□ 1.47
KRT40Q6A162 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC24.22■■□□□ 1.47
KRT40Q6A162 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC24.22■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms