Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
CCDC144BQ3MJ40 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC24.33■■□□□ 1.49
CCDC144BQ3MJ40 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
CCDC144BQ3MJ40 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC24.32■■□□□ 1.48
CCDC144BQ3MJ40 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
CCDC144BQ3MJ40 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC24.32■■□□□ 1.48
CCDC144BQ3MJ40 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC24.32■■□□□ 1.48
CCDC144BQ3MJ40 AC079089.2-201ENST00000531211 1277 ntBASIC24.32■■□□□ 1.48
CCDC144BQ3MJ40 BRI3-207ENST00000539286 699 ntTSL 2 BASIC24.32■■□□□ 1.48
CCDC144BQ3MJ40 SLC7A5P2-201ENST00000553010 536 ntBASIC24.32■■□□□ 1.48
CCDC144BQ3MJ40 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC24.32■■□□□ 1.48
CCDC144BQ3MJ40 LINC01960-201ENST00000563759 1884 ntBASIC24.32■■□□□ 1.48
CCDC144BQ3MJ40 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC24.32■■□□□ 1.48
CCDC144BQ3MJ40 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
CCDC144BQ3MJ40 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
CCDC144BQ3MJ40 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC24.32■■□□□ 1.48
CCDC144BQ3MJ40 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
CCDC144BQ3MJ40 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
CCDC144BQ3MJ40 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC24.31■■□□□ 1.48
CCDC144BQ3MJ40 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
CCDC144BQ3MJ40 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
CCDC144BQ3MJ40 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC24.31■■□□□ 1.48
CCDC144BQ3MJ40 METTL15-202ENST00000403099 795 ntTSL 5 BASIC24.31■■□□□ 1.48
CCDC144BQ3MJ40 GUSBP6-202ENST00000438529 1198 ntBASIC24.31■■□□□ 1.48
CCDC144BQ3MJ40 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC24.31■■□□□ 1.48
CCDC144BQ3MJ40 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC24.31■■□□□ 1.48
CCDC144BQ3MJ40 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC24.31■■□□□ 1.48
CCDC144BQ3MJ40 CD99P1-205ENST00000527459 561 ntBASIC24.31■■□□□ 1.48
CCDC144BQ3MJ40 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC24.31■■□□□ 1.48
CCDC144BQ3MJ40 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC24.31■■□□□ 1.48
CCDC144BQ3MJ40 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC24.31■■□□□ 1.48
CCDC144BQ3MJ40 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC24.31■■□□□ 1.48
CCDC144BQ3MJ40 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC24.31■■□□□ 1.48
CCDC144BQ3MJ40 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
CCDC144BQ3MJ40 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC24.31■■□□□ 1.48
CCDC144BQ3MJ40 PARP1-210ENST00000629232 477 ntTSL 5 BASIC24.31■■□□□ 1.48
CCDC144BQ3MJ40 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
CCDC144BQ3MJ40 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
CCDC144BQ3MJ40 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
CCDC144BQ3MJ40 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
CCDC144BQ3MJ40 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC24.3■■□□□ 1.48
CCDC144BQ3MJ40 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC24.3■■□□□ 1.48
CCDC144BQ3MJ40 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
CCDC144BQ3MJ40 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
CCDC144BQ3MJ40 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
CCDC144BQ3MJ40 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC24.3■■□□□ 1.48
CCDC144BQ3MJ40 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
CCDC144BQ3MJ40 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
CCDC144BQ3MJ40 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC24.29■■□□□ 1.48
CCDC144BQ3MJ40 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
CCDC144BQ3MJ40 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
CCDC144BQ3MJ40 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC24.29■■□□□ 1.48
CCDC144BQ3MJ40 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
CCDC144BQ3MJ40 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC24.29■■□□□ 1.48
CCDC144BQ3MJ40 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
CCDC144BQ3MJ40 OAS3-207ENST00000551007 998 ntTSL 2 BASIC24.29■■□□□ 1.48
CCDC144BQ3MJ40 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC24.29■■□□□ 1.48
CCDC144BQ3MJ40 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC24.29■■□□□ 1.48
CCDC144BQ3MJ40 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
CCDC144BQ3MJ40 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
CCDC144BQ3MJ40 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
CCDC144BQ3MJ40 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
CCDC144BQ3MJ40 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
CCDC144BQ3MJ40 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC24.29■■□□□ 1.48
CCDC144BQ3MJ40 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
CCDC144BQ3MJ40 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
CCDC144BQ3MJ40 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
CCDC144BQ3MJ40 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
CCDC144BQ3MJ40 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC24.28■■□□□ 1.48
CCDC144BQ3MJ40 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
CCDC144BQ3MJ40 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
CCDC144BQ3MJ40 AP004607.7-201ENST00000527152 1677 ntBASIC24.27■■□□□ 1.48
CCDC144BQ3MJ40 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
CCDC144BQ3MJ40 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC24.27■■□□□ 1.48
CCDC144BQ3MJ40 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC24.27■■□□□ 1.48
CCDC144BQ3MJ40 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC24.27■■□□□ 1.48
CCDC144BQ3MJ40 AL138781.1-201ENST00000566567 1274 ntBASIC24.27■■□□□ 1.48
CCDC144BQ3MJ40 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC24.27■■□□□ 1.48
CCDC144BQ3MJ40 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC24.27■■□□□ 1.48
CCDC144BQ3MJ40 TMEM191A-211ENST00000637163 1067 ntBASIC24.27■■□□□ 1.48
CCDC144BQ3MJ40 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC24.27■■□□□ 1.48
CCDC144BQ3MJ40 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
CCDC144BQ3MJ40 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC24.27■■□□□ 1.48
CCDC144BQ3MJ40 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC24.26■■□□□ 1.47
CCDC144BQ3MJ40 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
CCDC144BQ3MJ40 CNN2P6-201ENST00000439038 900 ntBASIC24.26■■□□□ 1.47
CCDC144BQ3MJ40 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC24.26■■□□□ 1.47
CCDC144BQ3MJ40 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC24.26■■□□□ 1.47
CCDC144BQ3MJ40 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
CCDC144BQ3MJ40 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
CCDC144BQ3MJ40 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
CCDC144BQ3MJ40 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
CCDC144BQ3MJ40 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
CCDC144BQ3MJ40 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
CCDC144BQ3MJ40 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
CCDC144BQ3MJ40 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
CCDC144BQ3MJ40 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
CCDC144BQ3MJ40 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC24.25■■□□□ 1.47
CCDC144BQ3MJ40 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
CCDC144BQ3MJ40 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms