Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
RFX4Q33E94 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RFX4Q33E94 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RFX4Q33E94 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RFX4Q33E94 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
RFX4Q33E94 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
RFX4Q33E94 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
RFX4Q33E94 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RFX4Q33E94 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
RFX4Q33E94 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC19.44■□□□□ 0.7
RFX4Q33E94 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
RFX4Q33E94 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RFX4Q33E94 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RFX4Q33E94 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
RFX4Q33E94 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC19.44■□□□□ 0.7
RFX4Q33E94 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
RFX4Q33E94 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
RFX4Q33E94 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
RFX4Q33E94 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RFX4Q33E94 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC19.44■□□□□ 0.7
RFX4Q33E94 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RFX4Q33E94 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
RFX4Q33E94 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
RFX4Q33E94 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RFX4Q33E94 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC19.43■□□□□ 0.7
RFX4Q33E94 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
RFX4Q33E94 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RFX4Q33E94 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
RFX4Q33E94 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RFX4Q33E94 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
RFX4Q33E94 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC19.43■□□□□ 0.7
RFX4Q33E94 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RFX4Q33E94 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RFX4Q33E94 RBM38-205ENST00000440234 686 ntTSL 2 BASIC19.43■□□□□ 0.7
RFX4Q33E94 AL034346.1-201ENST00000568244 1277 ntBASIC19.43■□□□□ 0.7
RFX4Q33E94 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC19.43■□□□□ 0.7
RFX4Q33E94 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
RFX4Q33E94 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC19.43■□□□□ 0.7
RFX4Q33E94 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RFX4Q33E94 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RFX4Q33E94 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
RFX4Q33E94 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RFX4Q33E94 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
RFX4Q33E94 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RFX4Q33E94 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RFX4Q33E94 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
RFX4Q33E94 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC19.42■□□□□ 0.7
RFX4Q33E94 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
RFX4Q33E94 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
RFX4Q33E94 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RFX4Q33E94 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
RFX4Q33E94 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
RFX4Q33E94 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
RFX4Q33E94 GUSBP5-201ENST00000418136 578 ntBASIC19.42■□□□□ 0.7
RFX4Q33E94 OR2I1P-207ENST00000453522 948 ntBASIC19.42■□□□□ 0.7
RFX4Q33E94 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
RFX4Q33E94 RASSF1-AS1-201ENST00000629828 790 ntBASIC19.42■□□□□ 0.7
RFX4Q33E94 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
RFX4Q33E94 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
RFX4Q33E94 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
RFX4Q33E94 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RFX4Q33E94 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC19.42■□□□□ 0.7
RFX4Q33E94 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
RFX4Q33E94 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RFX4Q33E94 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RFX4Q33E94 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC19.41■□□□□ 0.7
RFX4Q33E94 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC19.41■□□□□ 0.7
RFX4Q33E94 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RFX4Q33E94 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
RFX4Q33E94 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
RFX4Q33E94 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
RFX4Q33E94 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC19.41■□□□□ 0.7
RFX4Q33E94 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
RFX4Q33E94 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RFX4Q33E94 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC19.41■□□□□ 0.7
RFX4Q33E94 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC19.41■□□□□ 0.7
RFX4Q33E94 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC19.41■□□□□ 0.7
RFX4Q33E94 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RFX4Q33E94 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RFX4Q33E94 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
RFX4Q33E94 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC19.41■□□□□ 0.7
RFX4Q33E94 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
RFX4Q33E94 AC092171.4-201ENST00000609130 632 ntBASIC19.41■□□□□ 0.7
RFX4Q33E94 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
RFX4Q33E94 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RFX4Q33E94 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
RFX4Q33E94 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC19.41■□□□□ 0.7
RFX4Q33E94 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC19.41■□□□□ 0.7
RFX4Q33E94 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
RFX4Q33E94 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
RFX4Q33E94 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC19.41■□□□□ 0.7
RFX4Q33E94 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC19.41■□□□□ 0.7
RFX4Q33E94 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RFX4Q33E94 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC19.4■□□□□ 0.7
RFX4Q33E94 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
RFX4Q33E94 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC19.4■□□□□ 0.7
RFX4Q33E94 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
RFX4Q33E94 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RFX4Q33E94 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RFX4Q33E94 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 10.7 ms