Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
H3F3AP84243 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
H3F3AP84243 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
H3F3AP84243 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC18.77■□□□□ 0.6
H3F3AP84243 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC18.77■□□□□ 0.6
H3F3AP84243 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
H3F3AP84243 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
H3F3AP84243 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
H3F3AP84243 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
H3F3AP84243 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
H3F3AP84243 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
H3F3AP84243 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
H3F3AP84243 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC18.77■□□□□ 0.6
H3F3AP84243 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC18.77■□□□□ 0.6
H3F3AP84243 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC18.77■□□□□ 0.6
H3F3AP84243 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
H3F3AP84243 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.6
H3F3AP84243 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
H3F3AP84243 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
H3F3AP84243 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
H3F3AP84243 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
H3F3AP84243 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
H3F3AP84243 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
H3F3AP84243 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC18.76■□□□□ 0.59
H3F3AP84243 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
H3F3AP84243 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
H3F3AP84243 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
H3F3AP84243 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
H3F3AP84243 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC18.76■□□□□ 0.59
H3F3AP84243 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
H3F3AP84243 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
H3F3AP84243 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC18.76■□□□□ 0.59
H3F3AP84243 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC18.76■□□□□ 0.59
H3F3AP84243 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
H3F3AP84243 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC18.76■□□□□ 0.59
H3F3AP84243 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC18.76■□□□□ 0.59
H3F3AP84243 TFG-210ENST00000620299 1289 ntTSL 5 BASIC18.76■□□□□ 0.59
H3F3AP84243 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
H3F3AP84243 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
H3F3AP84243 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
H3F3AP84243 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC18.76■□□□□ 0.59
H3F3AP84243 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
H3F3AP84243 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
H3F3AP84243 KRT16P2-201ENST00000414673 1423 ntBASIC18.75■□□□□ 0.59
H3F3AP84243 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
H3F3AP84243 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC18.75■□□□□ 0.59
H3F3AP84243 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC18.75■□□□□ 0.59
H3F3AP84243 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
H3F3AP84243 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
H3F3AP84243 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
H3F3AP84243 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
H3F3AP84243 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
H3F3AP84243 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
H3F3AP84243 SLC7A5P1-201ENST00000568957 537 ntBASIC18.75■□□□□ 0.59
H3F3AP84243 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC18.75■□□□□ 0.59
H3F3AP84243 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC18.75■□□□□ 0.59
H3F3AP84243 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
H3F3AP84243 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
H3F3AP84243 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC18.75■□□□□ 0.59
H3F3AP84243 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
H3F3AP84243 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
H3F3AP84243 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC18.74■□□□□ 0.59
H3F3AP84243 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
H3F3AP84243 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC18.74■□□□□ 0.59
H3F3AP84243 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
H3F3AP84243 PARN-205ENST00000539279 1557 ntTSL 2 BASIC18.74■□□□□ 0.59
H3F3AP84243 STX7-201ENST00000367937 1090 ntTSL 5 BASIC18.74■□□□□ 0.59
H3F3AP84243 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
H3F3AP84243 GXYLT1P2-201ENST00000433312 1230 ntBASIC18.74■□□□□ 0.59
H3F3AP84243 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC18.74■□□□□ 0.59
H3F3AP84243 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC18.74■□□□□ 0.59
H3F3AP84243 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
H3F3AP84243 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
H3F3AP84243 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC18.74■□□□□ 0.59
H3F3AP84243 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
H3F3AP84243 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC18.73■□□□□ 0.59
H3F3AP84243 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
H3F3AP84243 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC18.73■□□□□ 0.59
H3F3AP84243 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
H3F3AP84243 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
H3F3AP84243 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
H3F3AP84243 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
H3F3AP84243 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
H3F3AP84243 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
H3F3AP84243 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
H3F3AP84243 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
H3F3AP84243 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
H3F3AP84243 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
H3F3AP84243 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
H3F3AP84243 SLC7A5P2-201ENST00000553010 536 ntBASIC18.73■□□□□ 0.59
H3F3AP84243 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC18.73■□□□□ 0.59
H3F3AP84243 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC18.73■□□□□ 0.59
H3F3AP84243 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
H3F3AP84243 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
H3F3AP84243 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
H3F3AP84243 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
H3F3AP84243 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
H3F3AP84243 FEM1AP4-201ENST00000443167 1987 ntBASIC18.72■□□□□ 0.59
H3F3AP84243 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
H3F3AP84243 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms