Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC21.56■■□□□ 1.04
NEK3P51956 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC21.56■■□□□ 1.04
NEK3P51956 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
NEK3P51956 FEM1AP4-201ENST00000443167 1987 ntBASIC21.56■■□□□ 1.04
NEK3P51956 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC21.56■■□□□ 1.04
NEK3P51956 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
NEK3P51956 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC21.56■■□□□ 1.04
NEK3P51956 AC016769.1-201ENST00000409132 1010 ntBASIC21.56■■□□□ 1.04
NEK3P51956 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC21.56■■□□□ 1.04
NEK3P51956 DBI-210ENST00000542275 757 ntTSL 5 BASIC21.56■■□□□ 1.04
NEK3P51956 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
NEK3P51956 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
NEK3P51956 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
NEK3P51956 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
NEK3P51956 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
NEK3P51956 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
NEK3P51956 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
NEK3P51956 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
NEK3P51956 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
NEK3P51956 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
NEK3P51956 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC21.55■■□□□ 1.04
NEK3P51956 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
NEK3P51956 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
NEK3P51956 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
NEK3P51956 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC21.55■■□□□ 1.04
NEK3P51956 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
NEK3P51956 AL121603.2-201ENST00000557373 2117 ntBASIC21.55■■□□□ 1.04
NEK3P51956 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
NEK3P51956 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
NEK3P51956 STX7-201ENST00000367937 1090 ntTSL 5 BASIC21.55■■□□□ 1.04
NEK3P51956 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
NEK3P51956 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC21.55■■□□□ 1.04
NEK3P51956 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC21.55■■□□□ 1.04
NEK3P51956 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC21.55■■□□□ 1.04
NEK3P51956 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC21.55■■□□□ 1.04
NEK3P51956 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
NEK3P51956 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
NEK3P51956 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
NEK3P51956 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
NEK3P51956 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
NEK3P51956 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
NEK3P51956 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
NEK3P51956 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
NEK3P51956 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
NEK3P51956 AF106564.1-201ENST00000607058 2553 ntBASIC21.54■■□□□ 1.04
NEK3P51956 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC21.54■■□□□ 1.04
NEK3P51956 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
NEK3P51956 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
NEK3P51956 AC006015.1-201ENST00000429970 570 ntBASIC21.54■■□□□ 1.04
NEK3P51956 RARRES2P11-201ENST00000635158 484 ntBASIC21.54■■□□□ 1.04
NEK3P51956 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
NEK3P51956 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC21.54■■□□□ 1.04
NEK3P51956 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
NEK3P51956 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
NEK3P51956 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
NEK3P51956 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
NEK3P51956 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
NEK3P51956 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
NEK3P51956 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
NEK3P51956 MFF-207ENST00000409565 1548 ntTSL 2 BASIC21.54■■□□□ 1.04
NEK3P51956 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
NEK3P51956 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
NEK3P51956 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC21.53■■□□□ 1.04
NEK3P51956 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC21.53■■□□□ 1.04
NEK3P51956 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
NEK3P51956 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
NEK3P51956 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
NEK3P51956 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
NEK3P51956 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
NEK3P51956 FXN-202ENST00000396364 980 ntTSL 5 BASIC21.53■■□□□ 1.04
NEK3P51956 HSCB-202ENST00000398941 955 ntTSL 2 BASIC21.53■■□□□ 1.04
NEK3P51956 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC21.53■■□□□ 1.04
NEK3P51956 DLX3-202ENST00000512495 834 ntTSL 2 BASIC21.53■■□□□ 1.04
NEK3P51956 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC21.53■■□□□ 1.04
NEK3P51956 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC21.53■■□□□ 1.04
NEK3P51956 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC21.53■■□□□ 1.04
NEK3P51956 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC21.53■■□□□ 1.04
NEK3P51956 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
NEK3P51956 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC21.53■■□□□ 1.04
NEK3P51956 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
NEK3P51956 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
NEK3P51956 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
NEK3P51956 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
NEK3P51956 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC21.53■■□□□ 1.04
NEK3P51956 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
NEK3P51956 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
NEK3P51956 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
NEK3P51956 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
NEK3P51956 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
NEK3P51956 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
NEK3P51956 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
NEK3P51956 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
NEK3P51956 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
NEK3P51956 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC21.52■■□□□ 1.04
NEK3P51956 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
NEK3P51956 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
NEK3P51956 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
NEK3P51956 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC21.52■■□□□ 1.03
NEK3P51956 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC21.52■■□□□ 1.03
NEK3P51956 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms