Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC18.36■□□□□ 0.53
COL8A1P27658 C2orf69P4-201ENST00000565394 541 ntBASIC18.36■□□□□ 0.53
COL8A1P27658 AC142381.3-201ENST00000568208 1670 ntBASIC18.36■□□□□ 0.53
COL8A1P27658 AC092368.3-202ENST00000574180 1591 ntBASIC18.36■□□□□ 0.53
COL8A1P27658 AC233702.5-201ENST00000584107 538 ntBASIC18.36■□□□□ 0.53
COL8A1P27658 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
COL8A1P27658 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL8A1P27658 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL8A1P27658 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL8A1P27658 H19-210ENST00000439725 1929 ntTSL 2 BASIC18.35■□□□□ 0.53
COL8A1P27658 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC18.35■□□□□ 0.53
COL8A1P27658 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL8A1P27658 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL8A1P27658 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL8A1P27658 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC18.35■□□□□ 0.53
COL8A1P27658 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL8A1P27658 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL8A1P27658 AC079089.2-201ENST00000531211 1277 ntBASIC18.35■□□□□ 0.53
COL8A1P27658 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC18.35■□□□□ 0.53
COL8A1P27658 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC18.35■□□□□ 0.53
COL8A1P27658 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL8A1P27658 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL8A1P27658 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
COL8A1P27658 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL8A1P27658 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL8A1P27658 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL8A1P27658 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL8A1P27658 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL8A1P27658 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL8A1P27658 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL8A1P27658 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
COL8A1P27658 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL8A1P27658 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL8A1P27658 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC18.34■□□□□ 0.53
COL8A1P27658 AC012618.2-201ENST00000428058 849 ntBASIC18.34■□□□□ 0.53
COL8A1P27658 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL8A1P27658 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL8A1P27658 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC18.34■□□□□ 0.53
COL8A1P27658 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL8A1P27658 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL8A1P27658 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL8A1P27658 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC18.34■□□□□ 0.53
COL8A1P27658 SOX15-203ENST00000570788 1093 ntBASIC18.34■□□□□ 0.53
COL8A1P27658 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC18.34■□□□□ 0.53
COL8A1P27658 AC097493.4-201ENST00000641197 219 ntBASIC18.34■□□□□ 0.53
COL8A1P27658 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC18.34■□□□□ 0.53
COL8A1P27658 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL8A1P27658 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL8A1P27658 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
COL8A1P27658 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL8A1P27658 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL8A1P27658 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
COL8A1P27658 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL8A1P27658 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.53
COL8A1P27658 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
COL8A1P27658 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
COL8A1P27658 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC18.33■□□□□ 0.53
COL8A1P27658 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
COL8A1P27658 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
COL8A1P27658 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
COL8A1P27658 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
COL8A1P27658 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
COL8A1P27658 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC18.33■□□□□ 0.53
COL8A1P27658 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
COL8A1P27658 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC18.33■□□□□ 0.52
COL8A1P27658 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC18.33■□□□□ 0.52
COL8A1P27658 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC18.33■□□□□ 0.52
COL8A1P27658 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC18.33■□□□□ 0.52
COL8A1P27658 AC012306.2-201ENST00000609350 630 ntBASIC18.33■□□□□ 0.52
COL8A1P27658 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL8A1P27658 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC18.33■□□□□ 0.52
COL8A1P27658 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL8A1P27658 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL8A1P27658 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL8A1P27658 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
COL8A1P27658 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL8A1P27658 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL8A1P27658 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
COL8A1P27658 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL8A1P27658 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL8A1P27658 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC18.32■□□□□ 0.52
COL8A1P27658 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC18.32■□□□□ 0.52
COL8A1P27658 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL8A1P27658 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC18.32■□□□□ 0.52
COL8A1P27658 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL8A1P27658 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
COL8A1P27658 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL8A1P27658 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL8A1P27658 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC18.32■□□□□ 0.52
COL8A1P27658 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC18.32■□□□□ 0.52
COL8A1P27658 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL8A1P27658 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL8A1P27658 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC18.31■□□□□ 0.52
COL8A1P27658 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC18.31■□□□□ 0.52
COL8A1P27658 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
COL8A1P27658 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL8A1P27658 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL8A1P27658 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL8A1P27658 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL8A1P27658 ISG20-202ENST00000379224 540 ntTSL 3 BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms