Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COL9A1P20849 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC21.75■■□□□ 1.07
COL9A1P20849 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC21.75■■□□□ 1.07
COL9A1P20849 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COL9A1P20849 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC21.75■■□□□ 1.07
COL9A1P20849 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COL9A1P20849 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC21.74■■□□□ 1.07
COL9A1P20849 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL9A1P20849 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL9A1P20849 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
COL9A1P20849 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL9A1P20849 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC21.74■■□□□ 1.07
COL9A1P20849 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC21.74■■□□□ 1.07
COL9A1P20849 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC21.74■■□□□ 1.07
COL9A1P20849 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC21.74■■□□□ 1.07
COL9A1P20849 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
COL9A1P20849 METTL23-204ENST00000586752 904 ntTSL 2 BASIC21.74■■□□□ 1.07
COL9A1P20849 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC21.74■■□□□ 1.07
COL9A1P20849 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
COL9A1P20849 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
COL9A1P20849 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL9A1P20849 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC21.73■■□□□ 1.07
COL9A1P20849 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL9A1P20849 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC21.73■■□□□ 1.07
COL9A1P20849 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
COL9A1P20849 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
COL9A1P20849 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
COL9A1P20849 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
COL9A1P20849 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC21.73■■□□□ 1.07
COL9A1P20849 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL9A1P20849 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC21.73■■□□□ 1.07
COL9A1P20849 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC21.73■■□□□ 1.07
COL9A1P20849 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC21.73■■□□□ 1.07
COL9A1P20849 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC21.73■■□□□ 1.07
COL9A1P20849 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC21.73■■□□□ 1.07
COL9A1P20849 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC21.73■■□□□ 1.07
COL9A1P20849 GPALPP1-207ENST00000611650 899 ntBASIC21.73■■□□□ 1.07
COL9A1P20849 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC21.73■■□□□ 1.07
COL9A1P20849 AC006557.6-201ENST00000623071 864 ntBASIC21.73■■□□□ 1.07
COL9A1P20849 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL9A1P20849 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL9A1P20849 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL9A1P20849 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL9A1P20849 AP004607.7-201ENST00000527152 1677 ntBASIC21.72■■□□□ 1.07
COL9A1P20849 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL9A1P20849 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
COL9A1P20849 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
COL9A1P20849 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL9A1P20849 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
COL9A1P20849 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC21.72■■□□□ 1.07
COL9A1P20849 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC21.72■■□□□ 1.07
COL9A1P20849 AC233263.1-201ENST00000578059 224 ntBASIC21.72■■□□□ 1.07
COL9A1P20849 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC21.72■■□□□ 1.07
COL9A1P20849 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
COL9A1P20849 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC21.72■■□□□ 1.07
COL9A1P20849 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL9A1P20849 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC21.72■■□□□ 1.07
COL9A1P20849 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC21.71■■□□□ 1.07
COL9A1P20849 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC21.71■■□□□ 1.07
COL9A1P20849 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC21.71■■□□□ 1.07
COL9A1P20849 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
COL9A1P20849 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC21.71■■□□□ 1.07
COL9A1P20849 AL353708.3-201ENST00000610272 989 ntBASIC21.71■■□□□ 1.07
COL9A1P20849 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC21.71■■□□□ 1.07
COL9A1P20849 AC005363.2-201ENST00000618631 242 ntBASIC21.71■■□□□ 1.07
COL9A1P20849 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL9A1P20849 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
COL9A1P20849 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL9A1P20849 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL9A1P20849 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
COL9A1P20849 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL9A1P20849 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL9A1P20849 AC005521.1-201ENST00000393351 872 ntBASIC21.7■■□□□ 1.06
COL9A1P20849 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
COL9A1P20849 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC21.7■■□□□ 1.06
COL9A1P20849 P4HB-223ENST00000576390 439 ntTSL 4 BASIC21.7■■□□□ 1.06
COL9A1P20849 AC060766.5-201ENST00000590539 871 ntBASIC21.7■■□□□ 1.06
COL9A1P20849 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC21.7■■□□□ 1.06
COL9A1P20849 AC010980.2-201ENST00000587099 1412 ntBASIC21.7■■□□□ 1.06
COL9A1P20849 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
COL9A1P20849 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL9A1P20849 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
COL9A1P20849 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
COL9A1P20849 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC21.69■■□□□ 1.06
COL9A1P20849 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL9A1P20849 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL9A1P20849 UPK3BP1-201ENST00000428678 509 ntBASIC21.69■■□□□ 1.06
COL9A1P20849 KRT18P56-201ENST00000507275 550 ntBASIC21.69■■□□□ 1.06
COL9A1P20849 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
COL9A1P20849 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC21.69■■□□□ 1.06
COL9A1P20849 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC21.69■■□□□ 1.06
COL9A1P20849 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC21.69■■□□□ 1.06
COL9A1P20849 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC21.69■■□□□ 1.06
COL9A1P20849 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
COL9A1P20849 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL9A1P20849 LINC00526-201ENST00000581067 1875 ntBASIC21.69■■□□□ 1.06
COL9A1P20849 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC21.68■■□□□ 1.06
COL9A1P20849 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL9A1P20849 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC21.68■■□□□ 1.06
COL9A1P20849 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC21.68■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms